Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BW721_RS02790 Genome accession   NZ_CP019433
Coordinates   552417..554099 (+) Length   560 a.a.
NCBI ID   WP_076765895.1    Uniprot ID   -
Organism   Jeotgalibaca sp. PTS2502     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 547417..559099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW721_RS02760 (BW721_02760) nusB 547646..548095 (+) 450 WP_076765884.1 transcription antitermination factor NusB -
  BW721_RS02765 (BW721_02765) - 548206..549054 (+) 849 WP_076765885.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  BW721_RS02770 (BW721_02770) xseA 549064..550404 (+) 1341 WP_076765887.1 exodeoxyribonuclease VII large subunit -
  BW721_RS02775 (BW721_02775) - 550397..550630 (+) 234 WP_076765889.1 exodeoxyribonuclease VII small subunit -
  BW721_RS02780 (BW721_02780) - 550646..551557 (+) 912 WP_076765891.1 polyprenyl synthetase family protein -
  BW721_RS02785 (BW721_02785) - 551559..552395 (+) 837 WP_076765893.1 TlyA family RNA methyltransferase -
  BW721_RS02790 (BW721_02790) recN 552417..554099 (+) 1683 WP_076765895.1 DNA repair protein RecN Machinery gene
  BW721_RS02795 (BW721_02795) - 554122..554856 (+) 735 WP_076765897.1 glycerophosphodiester phosphodiesterase -
  BW721_RS02800 (BW721_02800) miaA 554849..555784 (+) 936 WP_232222939.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  BW721_RS02805 (BW721_02805) hflX 555785..557038 (+) 1254 WP_076765899.1 GTPase HflX -
  BW721_RS02810 (BW721_02810) - 557031..558269 (+) 1239 WP_076765901.1 methionine gamma-lyase family protein -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63102.39 Da        Isoelectric Point: 4.6407

>NTDB_id=215778 BW721_RS02790 WP_076765895.1 552417..554099(+) (recN) [Jeotgalibaca sp. PTS2502]
MLQELSIKNFAIIDSLRIGFEGGMTVLTGETGAGKSIIIDAVGLLAGGRGSTDLIRHGEDKTVLQGLFTFPKSTILKERL
ETYGIDYDDDQILLQRELSRNGKNVARVNGSIVTVSILREIASHLIDIHGQNEHQELMNAQNHLYLLDQFADELTKKQLL
RYQADYDAYKQAKEELERLQSDEQENIQRIDLLTFQIDEIEQAKLIDNEEDSLLEERSLLANYQRILEGLTNAYRSLQGE
EGSAAIDQIGFGMESLERIQDFSPAYAGFYSSISEAYYQLEDVIASIRNEVDDLSYDEGRLNEIELRLEVIHQLKRKYGA
SILEIKAYYEKIVLELDMISNKESYIARLTKEFNQAKETVEKTGETLSTMRHKVAKKLEADVENQLKELYMEKATFKVHF
NEPAGTIYSDGLDQVEFYIATNVGEPLKPLTKVASGGELSRMMLALKTIFTQTQGITSIIFDEVDTGVSGRVAQAIANKI
HVVAAHSQVLCISHLPQVAAMADHHFYIEKEVTDNRTLTHVNAINEDKRTMEIARMLAGSDITELSIAHAKELLDLAKQQ

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=215778 BW721_RS02790 WP_076765895.1 552417..554099(+) (recN) [Jeotgalibaca sp. PTS2502]
ATGCTTCAAGAATTATCCATTAAAAATTTTGCGATTATCGATAGCCTTAGAATTGGATTCGAAGGCGGTATGACGGTTCT
AACAGGTGAAACGGGAGCAGGTAAATCCATTATTATTGATGCTGTTGGATTGTTAGCGGGTGGACGAGGATCAACTGACT
TAATTCGTCATGGTGAAGATAAAACCGTCTTACAAGGTTTGTTTACTTTTCCAAAATCAACTATTTTGAAAGAACGACTA
GAGACGTATGGGATTGATTATGATGACGACCAAATTTTATTGCAAAGAGAATTATCTCGTAATGGCAAAAATGTGGCCCG
TGTTAATGGAAGTATCGTAACGGTTTCTATTTTACGTGAGATTGCCAGCCATTTAATTGATATTCATGGCCAAAACGAGC
ATCAAGAACTCATGAATGCCCAAAATCACCTTTATTTGTTGGACCAATTTGCTGATGAGCTAACAAAAAAACAGTTGCTA
CGTTATCAGGCGGATTACGATGCTTATAAACAGGCTAAAGAAGAACTGGAACGTTTGCAATCAGACGAGCAGGAAAATAT
TCAACGGATTGATCTACTGACCTTTCAAATTGATGAAATCGAACAAGCGAAGCTTATTGATAATGAAGAAGACAGTTTAC
TAGAAGAACGTAGTTTACTGGCAAACTATCAACGTATTTTAGAAGGATTAACGAATGCTTATCGGTCACTTCAAGGCGAA
GAAGGTAGTGCAGCCATTGATCAGATTGGTTTTGGTATGGAATCCCTTGAACGTATTCAAGATTTTAGCCCTGCCTATGC
TGGCTTTTATAGCAGCATATCAGAAGCTTATTATCAATTAGAAGATGTGATTGCATCTATTCGAAATGAAGTTGATGATT
TAAGCTATGACGAAGGACGGTTGAATGAAATCGAACTTCGACTAGAGGTAATTCATCAGTTAAAACGAAAATATGGCGCA
TCAATCCTAGAAATTAAAGCGTATTATGAAAAGATTGTCTTAGAACTCGATATGATTTCGAATAAAGAAAGCTATATTGC
ACGTCTAACAAAAGAATTTAACCAAGCTAAAGAAACGGTTGAGAAGACGGGGGAAACATTAAGCACAATGAGGCATAAAG
TTGCTAAAAAGCTTGAAGCAGATGTTGAAAACCAGTTAAAAGAACTATATATGGAGAAAGCAACATTTAAGGTTCATTTT
AATGAACCGGCTGGAACCATTTATTCAGACGGCTTAGACCAAGTTGAATTCTACATCGCAACAAACGTTGGTGAACCGTT
AAAACCATTGACTAAAGTAGCCAGTGGTGGTGAGTTATCACGGATGATGTTAGCCCTAAAAACAATTTTCACTCAAACTC
AAGGCATAACTAGTATTATTTTTGATGAGGTAGACACAGGTGTAAGTGGTCGTGTTGCCCAAGCAATCGCTAATAAAATT
CATGTTGTTGCTGCTCATTCACAAGTCTTATGTATCAGTCATCTGCCTCAAGTAGCTGCTATGGCAGACCATCATTTTTA
CATTGAAAAAGAAGTCACTGACAACCGTACGCTGACTCATGTTAATGCGATTAATGAAGATAAACGCACAATGGAAATTG
CACGTATGTTAGCCGGCAGTGATATTACAGAACTGTCAATTGCTCACGCCAAGGAATTACTAGATTTGGCAAAACAACAA
TAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.738

100

0.509

Multiple sequence alignment