Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PspS49_RS25365 Genome accession   NZ_CP019432
Coordinates   5748545..5749912 (-) Length   455 a.a.
NCBI ID   WP_007909773.1    Uniprot ID   J2YZH4
Organism   Pseudomonas sp. S49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5743545..5754912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS49_RS25340 (PspS49_25670) - 5743677..5744387 (+) 711 WP_160041900.1 GntR family transcriptional regulator -
  PspS49_RS25345 (PspS49_25675) yjiA 5744486..5745457 (-) 972 WP_102899948.1 GTPase -
  PspS49_RS25350 (PspS49_25680) - 5745620..5745817 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  PspS49_RS25355 (PspS49_25685) - 5745833..5747899 (-) 2067 WP_095121699.1 carbon starvation CstA family protein -
  PspS49_RS25360 (PspS49_25690) - 5748059..5748427 (+) 369 WP_127929851.1 PilZ domain-containing protein -
  PspS49_RS25365 (PspS49_25695) radA 5748545..5749912 (-) 1368 WP_007909773.1 DNA repair protein RadA Machinery gene
  PspS49_RS25370 (PspS49_25700) - 5749958..5750503 (-) 546 WP_150775717.1 ankyrin repeat domain-containing protein -
  PspS49_RS25375 (PspS49_25705) katB 5750563..5752104 (-) 1542 WP_127929853.1 catalase KatB -
  PspS49_RS25380 (PspS49_25710) mscL 5752391..5752804 (+) 414 WP_007909770.1 large-conductance mechanosensitive channel protein MscL -
  PspS49_RS25385 (PspS49_25715) - 5752850..5753626 (-) 777 WP_150751717.1 ferredoxin--NADP reductase -
  PspS49_RS29730 (PspS49_25720) - 5753949..5754662 (+) 714 WP_174245088.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=215764 PspS49_RS25365 WP_007909773.1 5748545..5749912(-) (radA) [Pseudomonas sp. S49]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=215764 PspS49_RS25365 WP_007909773.1 5748545..5749912(-) (radA) [Pseudomonas sp. S49]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGTCAGTGCGGTGAGTG
TGGTGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGCGGCGCCACGGCACCGACCGGCCGCACCGGTTGGGCCG
GACAGCAGGCACAGATCAAAACCCTGGCTGAAGTCAGCATCGAAGAGATTCCGCGCTTCTCCACCGCGTCTGGTGAACTC
GATCGCGTGCTCGGTGGCGGTCTGGTCGATGGCTCGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCGACGAT
TCTGTTACAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCCCTGTACGTCACTGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGTCTCGGCTTGCCGCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCTCGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCACC
TGGCGGTGTTTCCCAGGTGCGTGAGAGTGCGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATTTTCCTCG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCGGGGCCTCGAGTTCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGGCGCCTGCGTTTGCTGCGCGCGGTGAAAAACCGTTTCGGTGCGGTCAACGAATTGGGCGTGTTCGG
CATGACTGACAAGGGCTTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTTACTCGTGCGCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCAACGTGGGAAGGCACGCGACCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGTCATCTGGCC
AATCCGCGTCGGGTGACGCTGGGACTGGATCAGAACCGTTTGGCGATGTTGCTCGCGGTGTTGCACCGCCATGGCGGGAT
TCCGACGCACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACGGCGTCTGATCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCTTGCGCAATCGGCCGTTGCCGCATGATCTGCTGGTGTTCGGTGAGGTCGGCCTGTCCGGC
GAAGTGCGCCCAGTGCCGAGCGGTCAAGAGCGGTTGAAGGAAGCGGCGAAGCATGGCTTCAAACGGGCGATCGTGCCGAA
GGGCAATGCGCCGAAGGAATCCCCACCAGGCTTGCAGATCATTGCCGTGACCCGCCTCGAACAGGCCCTCGACGCATTGT
TTGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464

Multiple sequence alignment