Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PspS35_RS25760 Genome accession   NZ_CP019431
Coordinates   5720722..5722089 (-) Length   455 a.a.
NCBI ID   WP_017737417.1    Uniprot ID   A0A6I6WB12
Organism   Pseudomonas sp. S35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5715722..5727089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS35_RS25740 (PspS35_25905) yjiA 5716771..5717730 (-) 960 WP_159937319.1 GTPase -
  PspS35_RS25745 (PspS35_25910) - 5717865..5718062 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  PspS35_RS25750 (PspS35_25915) - 5718078..5720144 (-) 2067 WP_159937320.1 carbon starvation CstA family protein -
  PspS35_RS25755 (PspS35_25920) - 5720319..5720687 (+) 369 WP_159937321.1 PilZ domain-containing protein -
  PspS35_RS25760 (PspS35_25925) radA 5720722..5722089 (-) 1368 WP_017737417.1 DNA repair protein RadA Machinery gene
  PspS35_RS25765 (PspS35_25930) - 5722125..5722664 (-) 540 WP_159937322.1 ankyrin repeat domain-containing protein -
  PspS35_RS25770 (PspS35_25935) katB 5722720..5724261 (-) 1542 WP_159937323.1 catalase KatB -
  PspS35_RS25775 (PspS35_25940) mscL 5724549..5724965 (+) 417 WP_056858221.1 large-conductance mechanosensitive channel protein MscL -
  PspS35_RS25780 (PspS35_25945) - 5725012..5725788 (-) 777 WP_159937324.1 ferredoxin--NADP reductase -
  PspS35_RS25785 (PspS35_25950) - 5726251..5726961 (+) 711 WP_159937325.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=215735 PspS35_RS25760 WP_017737417.1 5720722..5722089(-) (radA) [Pseudomonas sp. S35]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGIQIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=215735 PspS35_RS25760 WP_017737417.1 5720722..5722089(-) (radA) [Pseudomonas sp. S35]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCGGTGAATG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGCGGCGCTGCGGCGCCCACCGGCCGTGCCGGCTGGACCG
GCCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGTTTTTCCACCGCCTCCGGTGAGTTG
GACCGAGTGCTGGGCGGCGGACTGGTGGACGGTTCTGTCGTGCTGATCGGTGGCGACCCTGGCATCGGCAAATCGACCAT
CCTGCTGCAAACTTTGTGCAGCATCGCCAGCCGCATGCCGGCGCTATACGTCACCGGGGAAGAGTCCCAGCAGCAAGTGG
CCATGCGTGCGCGCCGCCTGGGCTTGCCCCAGGATCAGCTGCGGGTCATGACCGAAACCTGTATCGAAAGCATCATCGCC
ACGGCCCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCGCC
GGGCGGTGTATCCCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TTGGCCACGTGACCAAAGAGGGCGCACTGGCCGGGCCACGGGTGTTGGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTGACCCGTGCCCAGGAAGAAGTCCCCGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGTTGGTCGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCACGTAGGGTCACGTTGGGCCTGGACCAGAACCGGTTGGCCATGTTGCTGGCGGTGCTGCACCGTCACGGTGGCAT
TCCAACTCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCCTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGCCTCACGACCTGCTGGTGTTTGGTGAAGTGGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGCCAGGAGCGTTTGAAGGAAGCAGCCAAACATGGCTTCAAGCGTGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAGTCGCCGCCGGGGATCCAGATTATTGGGGTGACGCGGCTGGAGCAGGCGTTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6WB12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47

Multiple sequence alignment