Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PspR76_RS26550 Genome accession   NZ_CP019428
Coordinates   5876562..5877929 (-) Length   455 a.a.
NCBI ID   WP_017139308.1    Uniprot ID   A0A2P8L9W2
Organism   Pseudomonas sp. R76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5871562..5882929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR76_RS26525 (PspR76_27015) yjiA 5871827..5872786 (-) 960 WP_159960018.1 GTPase -
  PspR76_RS26530 (PspR76_27020) - 5872973..5873170 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  PspR76_RS26535 (PspR76_27025) - 5873186..5875252 (-) 2067 WP_159960020.1 carbon starvation CstA family protein -
  PspR76_RS26540 (PspR76_27030) - 5875427..5875795 (+) 369 WP_159960022.1 PilZ domain-containing protein -
  PspR76_RS26545 (PspR76_27035) - 5875800..5876534 (-) 735 WP_159960024.1 hypothetical protein -
  PspR76_RS26550 (PspR76_27040) radA 5876562..5877929 (-) 1368 WP_017139308.1 DNA repair protein RadA Machinery gene
  PspR76_RS26555 (PspR76_27045) - 5877965..5878504 (-) 540 WP_159960026.1 ankyrin repeat domain-containing protein -
  PspR76_RS26560 (PspR76_27050) katB 5878562..5880091 (-) 1530 WP_202982195.1 catalase -
  PspR76_RS26565 (PspR76_27055) mscL 5880391..5880807 (+) 417 WP_159960030.1 large-conductance mechanosensitive channel protein MscL -
  PspR76_RS26570 (PspR76_27060) - 5880867..5881643 (-) 777 WP_159960032.1 ferredoxin--NADP reductase -
  PspR76_RS26575 (PspR76_27065) - 5882100..5882810 (+) 711 WP_159960034.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48749.33 Da        Isoelectric Point: 7.1316

>NTDB_id=215697 PspR76_RS26550 WP_017139308.1 5876562..5877929(-) (radA) [Pseudomonas sp. R76]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNKPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLKVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=215697 PspR76_RS26550 WP_017139308.1 5876562..5877929(-) (radA) [Pseudomonas sp. R76]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG
CGGCGCGTGGAACACCCTGACGGAAACCATGATTGAAAGCGGCGGCGCTGCGGCCCCCACCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAAACCCTGGCCGAAGTCAGCGTTGAAGAGATCCCGCGCTTCTCCACCGCCTCCGGCGAGCTG
GACCGCGTACTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGTGACCCCGGCATCGGCAAATCGACCAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCACTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCCCGCATCGAAAAGCCCAAAGTCATGGTGATCGACTCGATCCAGACAATTTTCACCGAGCAGCTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGGTATGCCAAGCAGAGCGGTACGGCGATCTTCCTGG
TCGGCCATGTGACCAAAGAAGGCGCGTTGGCCGGGCCGCGAGTGCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGGCTCCGCTTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAATTGGGCGTGTTCGC
CATGACTGACCGCGGCCTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTCACGCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGCCGGGTCACCCTCGGGCTGGATCAGAACCGCTTGGCGATGCTGCTGGCGGTGTTGCACCGTCACGGCGGCAT
TCCCACCCACGATCAGGACGTGTTCCTTAACGTGGTCGGCGGTGTCAAGGTGTTGGAAACCGCTTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATAAGCCGCTGCCCCATGATTTGCTGGTGTTTGGTGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGTGGCCAGGAGCGCCTTAAAGAAGCCGCCAAACACGGCTTCAAGCGTGCGATTGTGCCCAA
GGGCAACGCGCCAAAAGAGATGCCCGCTGGGTTAAAGGTGATTGGCGTCACGCGCCTGGAGCAGGCGTTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8L9W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment