Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CV098_RS02045 Genome accession   NZ_CP024958
Coordinates   412268..412984 (-) Length   238 a.a.
NCBI ID   WP_003131538.1    Uniprot ID   Q9CID8
Organism   Lactococcus lactis subsp. lactis strain G423     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 407268..417984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV098_RS02030 (CV098_02030) cdaA 408961..409839 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  CV098_RS02035 (CV098_02035) - 409829..410788 (+) 960 WP_017864140.1 YbbR-like domain-containing protein -
  CV098_RS02040 (CV098_02040) glmM 410834..412192 (+) 1359 WP_017864141.1 phosphoglucosamine mutase -
  CV098_RS02045 (CV098_02045) treR 412268..412984 (-) 717 WP_003131538.1 trehalose operon repressor Regulator
  CV098_RS02050 (CV098_02050) - 413095..413580 (+) 486 WP_012897247.1 PTS sugar transporter subunit IIA -
  CV098_RS02055 (CV098_02055) - 413717..415282 (+) 1566 WP_017864142.1 PTS transporter subunit EIIC -
  CV098_RS02060 (CV098_02060) - 415350..417659 (+) 2310 WP_017864143.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27865.52 Da        Isoelectric Point: 6.4168

>NTDB_id=215692 CV098_RS02045 WP_003131538.1 412268..412984(-) (treR) [Lactococcus lactis subsp. lactis strain G423]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=215692 CV098_RS02045 WP_003131538.1 412268..412984(-) (treR) [Lactococcus lactis subsp. lactis strain G423]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CID8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462