Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CV702_RS08780 Genome accession   NZ_CP024954
Coordinates   1851785..1852456 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain F44     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1846785..1857456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV702_RS08755 (CV702_08765) pheA 1847090..1847929 (-) 840 WP_014570689.1 prephenate dehydratase -
  CV702_RS08760 (CV702_08770) - 1847931..1848419 (-) 489 WP_017864896.1 shikimate kinase -
  CV702_RS08765 (CV702_08775) aroA 1848443..1849735 (-) 1293 WP_017864897.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  CV702_RS08770 (CV702_08780) - 1849856..1850920 (-) 1065 WP_017864898.1 prephenate dehydrogenase -
  CV702_RS08775 (CV702_08785) - 1850923..1851798 (-) 876 WP_017864899.1 sensor histidine kinase -
  CV702_RS08780 (CV702_08790) braR 1851785..1852456 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  CV702_RS08785 (CV702_08795) - 1852459..1853523 (-) 1065 WP_017864900.1 VanZ family protein -
  CV702_RS08790 (CV702_08800) - 1853704..1855707 (-) 2004 WP_017864901.1 FtsX-like permease family protein -
  CV702_RS08795 (CV702_08805) - 1855700..1856479 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  CV702_RS11990 - 1856494..1856637 (-) 144 WP_014570691.1 hypothetical protein -
  CV702_RS08800 (CV702_08810) - 1856668..1857027 (-) 360 WP_010906119.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=215636 CV702_RS08780 WP_003132782.1 1851785..1852456(-) (braR) [Lactococcus lactis subsp. lactis strain F44]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=215636 CV702_RS08780 WP_003132782.1 1851785..1852456(-) (braR) [Lactococcus lactis subsp. lactis strain F44]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment