Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ46_RS05165 Genome accession   NZ_CP019418
Coordinates   1075434..1076039 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Yovokome str. S-1850     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070434..1081039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ46_RS05145 (LFZ46_05145) - 1070829..1072589 (-) 1761 WP_000156448.1 Lon protease family protein -
  LFZ46_RS05150 (LFZ46_05150) matP 1072775..1073227 (+) 453 WP_020438012.1 macrodomain Ter protein MatP -
  LFZ46_RS05155 (LFZ46_05155) ompA 1073299..1074351 (-) 1053 WP_023259507.1 porin OmpA -
  LFZ46_RS05160 (LFZ46_05160) sulA 1074708..1075217 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ46_RS05165 (LFZ46_05165) sxy/tfoX 1075434..1076039 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ46_RS05170 (LFZ46_05170) yccS 1076026..1078179 (-) 2154 WP_000950876.1 YccS family putative transporter -
  LFZ46_RS05175 (LFZ46_05175) - 1078198..1078644 (-) 447 WP_020438015.1 YccF domain-containing protein -
  LFZ46_RS05180 (LFZ46_05180) helD 1078768..1080822 (+) 2055 WP_076734739.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215605 LFZ46_RS05165 WP_001202375.1 1075434..1076039(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Yovokome str. S-1850]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215605 LFZ46_RS05165 WP_001202375.1 1075434..1076039(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Yovokome str. S-1850]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment