Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   CV702_RS01910 Genome accession   NZ_CP024954
Coordinates   381302..382084 (+) Length   260 a.a.
NCBI ID   WP_017864130.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain F44     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 376302..387084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV702_RS01885 (CV702_01885) vicX 376327..377139 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  CV702_RS01890 (CV702_01890) vicK 377308..378750 (-) 1443 WP_012897229.1 sensor histidine kinase Regulator
  CV702_RS01895 (CV702_01895) yycF 378743..379444 (-) 702 WP_003131580.1 response regulator YycF -
  CV702_RS01900 (CV702_01900) tmk 379622..380257 (+) 636 WP_012897230.1 dTMP kinase -
  CV702_RS01905 (CV702_01905) - 380390..381250 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  CV702_RS01910 (CV702_01910) yaaT 381302..382084 (+) 783 WP_017864130.1 PSP1 domain-containing protein Regulator
  CV702_RS01915 (CV702_01915) yabA 382077..382403 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  CV702_RS01920 (CV702_01920) rsmI 382403..383278 (+) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CV702_RS01925 (CV702_01925) - 383355..383546 (-) 192 WP_012897234.1 hypothetical protein -
  CV702_RS01930 (CV702_01930) mvk 383609..384541 (-) 933 WP_003131564.1 mevalonate kinase -
  CV702_RS01935 (CV702_01935) mvaD 384847..385803 (+) 957 WP_017864131.1 diphosphomevalonate decarboxylase -
  CV702_RS01940 (CV702_01940) - 385790..386779 (+) 990 WP_017864132.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29789.20 Da        Isoelectric Point: 5.7444

>NTDB_id=215601 CV702_RS01910 WP_017864130.1 381302..382084(+) (yaaT) [Lactococcus lactis subsp. lactis strain F44]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGNGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=215601 CV702_RS01910 WP_017864130.1 381302..382084(+) (yaaT) [Lactococcus lactis subsp. lactis strain F44]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTTGACCAAATGCA
ACTTTTTATTTCGTTTACGGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCGAAAATTCATGGGGGACTTGGACCTTGTGGGCGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTAAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACTTCAGAAGGAAACGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATACAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388

Multiple sequence alignment