Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CV702_RS00350 Genome accession   NZ_CP024954
Coordinates   67347..68132 (-) Length   261 a.a.
NCBI ID   WP_017863961.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain F44     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 62347..73132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV702_RS00320 (CV702_00320) - 63136..63726 (+) 591 WP_017863958.1 flavin reductase family protein -
  CV702_RS00325 (CV702_00325) - 63762..64064 (-) 303 WP_003132256.1 hypothetical protein -
  CV702_RS00330 (CV702_00330) - 64066..64233 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  CV702_RS00335 (CV702_00335) rpmG 64800..64949 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  CV702_RS00340 (CV702_00340) rpmF 64979..65152 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  CV702_RS00345 (CV702_00345) - 65516..67297 (+) 1782 WP_017863960.1 heavy metal translocating P-type ATPase -
  CV702_RS00350 (CV702_00350) spo0J 67347..68132 (-) 786 WP_017863961.1 ParB/RepB/Spo0J family partition protein Regulator
  CV702_RS00355 (CV702_00355) rarA 68187..69446 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  CV702_RS00360 (CV702_00360) - 69490..69978 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  CV702_RS00365 (CV702_00365) - 70130..70597 (+) 468 WP_010905112.1 DUF3013 family protein -
  CV702_RS00370 (CV702_00370) - 70627..72180 (+) 1554 WP_017863962.1 ABC-F family ATP-binding cassette domain-containing protein -
  CV702_RS00375 (CV702_00375) - 72311..72595 (+) 285 WP_010905114.1 hypothetical protein -
  CV702_RS00380 (CV702_00380) - 72633..73121 (+) 489 WP_017863963.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29741.64 Da        Isoelectric Point: 9.7097

>NTDB_id=215588 CV702_RS00350 WP_017863961.1 67347..68132(-) (spo0J) [Lactococcus lactis subsp. lactis strain F44]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAKLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=215588 CV702_RS00350 WP_017863961.1 67347..68132(-) (spo0J) [Lactococcus lactis subsp. lactis strain F44]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCAAAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCATTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471