Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ93_RS05030 Genome accession   NZ_CP019416
Coordinates   1040790..1041395 (+) Length   201 a.a.
NCBI ID   WP_076730919.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Nitra strain S-1687     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035790..1046395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ93_RS05010 (LFZ93_05010) - 1036185..1037945 (-) 1761 WP_000156454.1 Lon protease family protein -
  LFZ93_RS05015 (LFZ93_05015) matP 1038131..1038583 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ93_RS05020 (LFZ93_05020) ompA 1038655..1039707 (-) 1053 WP_001674965.1 porin OmpA -
  LFZ93_RS05025 (LFZ93_05025) sulA 1040064..1040573 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ93_RS05030 (LFZ93_05030) sxy/tfoX 1040790..1041395 (+) 606 WP_076730919.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ93_RS05035 (LFZ93_05035) yccS 1041382..1043535 (-) 2154 WP_000950880.1 YccS family putative transporter -
  LFZ93_RS05040 (LFZ93_05040) - 1043554..1044000 (-) 447 WP_001742926.1 YccF domain-containing protein -
  LFZ93_RS05045 (LFZ93_05045) helD 1044124..1046178 (+) 2055 WP_076730920.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23134.92 Da        Isoelectric Point: 8.7387

>NTDB_id=215559 LFZ93_RS05030 WP_076730919.1 1040790..1041395(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Nitra strain S-1687]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKPSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215559 LFZ93_RS05030 WP_076730919.1 1040790..1041395(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Nitra strain S-1687]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACCCAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment