Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CV724_RS07110 Genome accession   NZ_CP024952
Coordinates   1458422..1458880 (+) Length   152 a.a.
NCBI ID   WP_165486708.1    Uniprot ID   -
Organism   Helicobacter pylori strain B125A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453422..1463880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS07090 (CV724_07110) dnaK 1453517..1455379 (+) 1863 WP_145727389.1 molecular chaperone DnaK -
  CV724_RS07095 (CV724_07115) - 1455611..1456189 (-) 579 WP_145727390.1 hypothetical protein -
  CV724_RS07100 (CV724_07120) - 1456304..1457221 (+) 918 WP_194151233.1 O-acetylserine-dependent cystathionine beta-synthase -
  CV724_RS07105 (CV724_07125) - 1457242..1458384 (+) 1143 WP_145727392.1 cystathionine gamma-synthase -
  CV724_RS07110 (CV724_07130) luxS 1458422..1458880 (+) 459 WP_165486708.1 S-ribosylhomocysteine lyase Regulator
  CV724_RS07115 (CV724_07135) - 1459067..1460767 (+) 1701 WP_338153713.1 5'-nucleotidase C-terminal domain-containing protein -
  CV724_RS07120 (CV724_07140) tlpB 1460973..1462670 (+) 1698 WP_145727394.1 methyl-accepting chemotaxis protein TlpB -
  CV724_RS07125 (CV724_07145) - 1462702..1463484 (+) 783 WP_145727395.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17326.79 Da        Isoelectric Point: 7.1165

>NTDB_id=215531 CV724_RS07110 WP_165486708.1 1458422..1458880(+) (luxS) [Helicobacter pylori strain B125A]
MKMNVESFNLDHTKVKAPYVRIADRKKGANGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEVLEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=215531 CV724_RS07110 WP_165486708.1 1458422..1458880(+) (luxS) [Helicobacter pylori strain B125A]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTACGCATCGCTGATCGCAAAAA
GGGTGCTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAACAGCCCAATAAGGATCACATGGACATGCCTAGCC
TACACTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGGTTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACCTTAGAGGGTGCTA
AGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

92.763

0.395

Multiple sequence alignment