Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   CV724_RS05880 Genome accession   NZ_CP024952
Coordinates   1212299..1213534 (-) Length   411 a.a.
NCBI ID   WP_145727255.1    Uniprot ID   -
Organism   Helicobacter pylori strain B125A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1207299..1218534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS05840 (CV724_05860) - 1207410..1209146 (-) 1737 WP_194151169.1 type IV secretory system conjugative DNA transfer family protein -
  CV724_RS05845 (CV724_05865) - 1209146..1209703 (-) 558 WP_001167777.1 hypothetical protein -
  CV724_RS05850 (CV724_05870) - 1209704..1209994 (-) 291 WP_097692878.1 hypothetical protein -
  CV724_RS05855 (CV724_05875) - 1209991..1210446 (-) 456 WP_000795419.1 hypothetical protein -
  CV724_RS05860 (CV724_05880) - 1210443..1211384 (-) 942 WP_145727253.1 ATPase, T2SS/T4P/T4SS family -
  CV724_RS05865 (CV724_05885) - 1211384..1211683 (-) 300 WP_120864145.1 hypothetical protein -
  CV724_RS05870 (CV724_05890) - 1211680..1211943 (-) 264 WP_000564641.1 hypothetical protein -
  CV724_RS05875 (CV724_05895) - 1211936..1212229 (-) 294 WP_145727254.1 hypothetical protein -
  CV724_RS05880 (CV724_05900) comB10 1212299..1213534 (-) 1236 WP_145727255.1 DNA type IV secretion system protein ComB10 Machinery gene
  CV724_RS05885 (CV724_05905) - 1213531..1215072 (-) 1542 WP_145727256.1 TrbG/VirB9 family P-type conjugative transfer protein -
  CV724_RS05890 (CV724_05910) - 1215072..1216058 (-) 987 WP_145727257.1 VirB8/TrbF family protein -
  CV724_RS08380 - 1216060..1216188 (-) 129 WP_000769068.1 hypothetical protein -
  CV724_RS05895 (CV724_05915) - 1216188..1218122 (-) 1935 WP_145727514.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46472.50 Da        Isoelectric Point: 10.0077

>NTDB_id=215521 CV724_RS05880 WP_145727255.1 1212299..1213534(-) (comB10) [Helicobacter pylori strain B125A]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDTKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=215521 CV724_RS05880 WP_145727255.1 1212299..1213534(-) (comB10) [Helicobacter pylori strain B125A]
ATGAAAAAACTTCTTTTACTTCTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAACTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCTTCTCGTATTAGCAGTCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTCAATATCATACTAAGCGATACTAAGGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAATAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
GGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATCAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAACAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.828

70.56

0.387