Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ26_RS04855 Genome accession   NZ_CP019414
Coordinates   1008631..1009236 (+) Length   201 a.a.
NCBI ID   WP_058116384.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Manchester str. ST278     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003631..1014236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ26_RS04835 (LFZ26_04835) - 1004026..1005786 (-) 1761 WP_076736912.1 AAA family ATPase -
  LFZ26_RS04840 (LFZ26_04840) matP 1005972..1006424 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ26_RS04845 (LFZ26_04845) ompA 1006496..1007548 (-) 1053 WP_001674965.1 porin OmpA -
  LFZ26_RS04850 (LFZ26_04850) sulA 1007905..1008414 (-) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  LFZ26_RS04855 (LFZ26_04855) sxy/tfoX 1008631..1009236 (+) 606 WP_058116384.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ26_RS04860 (LFZ26_04860) yccS 1009223..1011376 (-) 2154 WP_000950869.1 YccS family putative transporter -
  LFZ26_RS04865 (LFZ26_04865) - 1011395..1011841 (-) 447 WP_023243628.1 YccF domain-containing protein -
  LFZ26_RS04870 (LFZ26_04870) helD 1011965..1014019 (+) 2055 WP_076736914.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23223.03 Da        Isoelectric Point: 8.9918

>NTDB_id=215515 LFZ26_RS04855 WP_058116384.1 1008631..1009236(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Manchester str. ST278]
MRALSYYRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215515 LFZ26_RS04855 WP_058116384.1 1008631..1009236(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Manchester str. ST278]
ATGAGAGCACTCTCTTATTACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAATATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCTAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGTTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment