Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CV724_RS01670 Genome accession   NZ_CP024952
Coordinates   324474..325523 (-) Length   349 a.a.
NCBI ID   WP_145726774.1    Uniprot ID   -
Organism   Helicobacter pylori strain B125A     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 319474..330523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS01640 (CV724_01640) rpsG 319487..319954 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  CV724_RS01645 (CV724_01645) fusA 319966..322044 (+) 2079 WP_078303286.1 elongation factor G -
  CV724_RS01655 (CV724_01650) - 322847..323837 (-) 991 Protein_314 aldo/keto reductase -
  CV724_RS01665 (CV724_01660) - 324056..324280 (+) 225 WP_033616766.1 hypothetical protein -
  CV724_RS01670 (CV724_01665) waaF 324474..325523 (-) 1050 WP_145726774.1 lipopolysaccharide heptosyltransferase II Regulator
  CV724_RS01675 (CV724_01670) hisS 325585..326913 (+) 1329 WP_145726775.1 histidine--tRNA ligase -
  CV724_RS01680 (CV724_01675) asd 326900..327940 (+) 1041 WP_145726776.1 aspartate-semialdehyde dehydrogenase -
  CV724_RS01685 (CV724_01680) - 328372..329502 (+) 1131 WP_145726777.1 DUF874 family protein -
  CV724_RS01690 (CV724_01685) - 329734..330477 (-) 744 WP_145726778.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39406.01 Da        Isoelectric Point: 9.3592

>NTDB_id=215503 CV724_RS01670 WP_145726774.1 324474..325523(-) (waaF) [Helicobacter pylori strain B125A]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLSH
SAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVATSTQTPLIALFGPTDEKETSPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=215503 CV724_RS01670 WP_145726774.1 324474..325523(-) (waaF) [Helicobacter pylori strain B125A]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGTCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTATCCCAT
AGCGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTGGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCACTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTAGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAACGAAAAAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.971

98.854

0.375