Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   CV725_RS07580 Genome accession   NZ_CP024951
Coordinates   1552819..1553955 (-) Length   378 a.a.
NCBI ID   WP_001045869.1    Uniprot ID   -
Organism   Helicobacter pylori B128     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547819..1558955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV725_RS07560 (CV725_07580) hypE 1547934..1548932 (+) 999 WP_000378855.1 hydrogenase expression/formation protein HypE -
  CV725_RS07565 (CV725_07585) - 1549239..1550171 (-) 933 WP_001006014.1 GDP-L-fucose synthase -
  CV725_RS07570 (CV725_07590) gmd 1550164..1551309 (-) 1146 WP_000659801.1 GDP-mannose 4,6-dehydratase -
  CV725_RS07575 (CV725_07595) - 1551337..1552749 (-) 1413 WP_001861341.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  CV725_RS07580 (CV725_07600) comB10 1552819..1553955 (-) 1137 WP_001045869.1 DNA type IV secretion system protein ComB10 Machinery gene
  CV725_RS07585 (CV725_07605) comB9 1553948..1554931 (-) 984 WP_001861340.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  CV725_RS07590 (CV725_07610) comB8 1554931..1555674 (-) 744 WP_000660520.1 virB8 family protein Machinery gene
  CV725_RS07595 (CV725_07615) comB7 1555671..1555784 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  CV725_RS07600 (CV725_07620) comB6 1555800..1556855 (-) 1056 WP_000786677.1 P-type conjugative transfer protein TrbL Machinery gene
  CV725_RS07605 (CV725_07625) - 1556863..1557858 (-) 996 WP_000468428.1 PDZ domain-containing protein -
  CV725_RS07610 (CV725_07630) - 1557858..1558160 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  CV725_RS07615 (CV725_07635) panD 1558163..1558516 (-) 354 WP_000142236.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42295.98 Da        Isoelectric Point: 10.0478

>NTDB_id=215489 CV725_RS07580 WP_001045869.1 1552819..1553955(-) (comB10) [Helicobacter pylori B128]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=215489 CV725_RS07580 WP_001045869.1 1552819..1553955(-) (comB10) [Helicobacter pylori B128]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.032

100

0.96