Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CV726_RS07095 Genome accession   NZ_CP024950
Coordinates   1450061..1450528 (+) Length   155 a.a.
NCBI ID   WP_194151649.1    Uniprot ID   -
Organism   Helicobacter pylori strain B130A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1445061..1455528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV726_RS07075 (CV726_07065) dnaK 1445174..1447036 (+) 1863 WP_121006522.1 molecular chaperone DnaK -
  CV726_RS07080 (CV726_07070) - 1447268..1447837 (-) 570 WP_145940635.1 hypothetical protein -
  CV726_RS07085 (CV726_07075) - 1447951..1448868 (+) 918 WP_194151648.1 O-acetylserine-dependent cystathionine beta-synthase -
  CV726_RS07090 (CV726_07080) - 1448889..1450031 (+) 1143 WP_001242801.1 cystathionine gamma-synthase -
  CV726_RS07095 (CV726_07085) luxS 1450061..1450528 (+) 468 WP_194151649.1 S-ribosylhomocysteine lyase Regulator
  CV726_RS07100 (CV726_07090) - 1450662..1452407 (+) 1746 WP_145940637.1 5'-nucleotidase C-terminal domain-containing protein -
  CV726_RS07105 (CV726_07095) tlpB 1452613..1454310 (+) 1698 WP_145940638.1 methyl-accepting chemotaxis protein TlpB -
  CV726_RS07110 (CV726_07100) - 1454342..1455124 (+) 783 WP_145940639.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17766.35 Da        Isoelectric Point: 7.4753

>NTDB_id=215450 CV726_RS07095 WP_194151649.1 1450061..1450528(+) (luxS) [Helicobacter pylori strain B130A]
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYIVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAKNLARAFLDKRTEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=215450 CV726_RS07095 WP_194151649.1 1450061..1450528(+) (luxS) [Helicobacter pylori strain B130A]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTAGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAACAGCCCAATAAGGATCACATGGACA
TGCCTAGCCTACACTCTTTAGAGCATTTAGTTGCTGAAATTATCCGCAACCATGCTAATTATATCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCCAAGAATTTAGCACGCGCTTTTTTAGACAAACGCACTGAGTGGTCTGAAGTGGGAGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

43.972

90.968

0.4