Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ19_RS05105 Genome accession   NZ_CP019411
Coordinates   1056934..1057539 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Johannesburg str. ST203     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051934..1062539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ19_RS05085 (LFZ19_05085) - 1052329..1054089 (-) 1761 WP_000156458.1 Lon protease family protein -
  LFZ19_RS05090 (LFZ19_05090) matP 1054275..1054727 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ19_RS05095 (LFZ19_05095) ompA 1054799..1055851 (-) 1053 WP_001562588.1 porin OmpA -
  LFZ19_RS05100 (LFZ19_05100) sulA 1056208..1056717 (-) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  LFZ19_RS05105 (LFZ19_05105) sxy/tfoX 1056934..1057539 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ19_RS05110 (LFZ19_05110) yccS 1057526..1059679 (-) 2154 WP_000950879.1 YccS family putative transporter -
  LFZ19_RS05115 (LFZ19_05115) - 1059698..1060144 (-) 447 WP_023196811.1 YccF domain-containing protein -
  LFZ19_RS05120 (LFZ19_05120) helD 1060268..1062322 (+) 2055 WP_023196810.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215449 LFZ19_RS05105 WP_001202375.1 1056934..1057539(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Johannesburg str. ST203]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215449 LFZ19_RS05105 WP_001202375.1 1056934..1057539(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Johannesburg str. ST203]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGTGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGTGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGTCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment