Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CV726_RS02105 Genome accession   NZ_CP024950
Coordinates   415659..416708 (-) Length   349 a.a.
NCBI ID   WP_145940047.1    Uniprot ID   -
Organism   Helicobacter pylori strain B130A     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 410659..421708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV726_RS02085 (CV726_02090) rpsG 411016..411483 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  CV726_RS02090 (CV726_02095) fusA 411495..413573 (+) 2079 WP_021303769.1 elongation factor G -
  CV726_RS02095 (CV726_02100) - 414100..415089 (-) 990 Protein_397 aldo/keto reductase -
  CV726_RS08125 - 415223..415474 (+) 252 WP_341350506.1 hypothetical protein -
  CV726_RS02105 (CV726_02110) waaF 415659..416708 (-) 1050 WP_145940047.1 lipopolysaccharide heptosyltransferase II Regulator
  CV726_RS02110 (CV726_02115) hisS 416770..418098 (+) 1329 WP_145940048.1 histidine--tRNA ligase -
  CV726_RS02115 (CV726_02120) asd 418085..419125 (+) 1041 WP_145940049.1 aspartate-semialdehyde dehydrogenase -
  CV726_RS02120 (CV726_02125) - 419558..420655 (+) 1098 WP_145940050.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39454.11 Da        Isoelectric Point: 9.5434

>NTDB_id=215430 CV726_RS02105 WP_145940047.1 415659..416708(-) (waaF) [Helicobacter pylori strain B130A]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHAAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=215430 CV726_RS02105 WP_145940047.1 415659..416708(-) (waaF) [Helicobacter pylori strain B130A]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCTCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCGAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCGCACAAACCCCTTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.861

99.14

0.375