Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ8_RS05545 Genome accession   NZ_CP019409
Coordinates   1139388..1139993 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Djakarta str. S-1087     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134388..1144993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ8_RS05525 (LFZ8_05525) - 1134783..1136543 (-) 1761 WP_000156458.1 Lon protease family protein -
  LFZ8_RS05530 (LFZ8_05530) matP 1136729..1137181 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ8_RS05535 (LFZ8_05535) ompA 1137253..1138305 (-) 1053 WP_001562588.1 porin OmpA -
  LFZ8_RS05540 (LFZ8_05540) sulA 1138662..1139171 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ8_RS05545 (LFZ8_05545) sxy/tfoX 1139388..1139993 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ8_RS05550 (LFZ8_05550) yccS 1139980..1142133 (-) 2154 WP_076935087.1 YccS family putative transporter -
  LFZ8_RS05555 (LFZ8_05555) - 1142152..1142598 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ8_RS05560 (LFZ8_05560) helD 1142722..1144776 (+) 2055 WP_023207980.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215405 LFZ8_RS05545 WP_001202375.1 1139388..1139993(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Djakarta str. S-1087]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215405 LFZ8_RS05545 WP_001202375.1 1139388..1139993(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Djakarta str. S-1087]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAACACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment