Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CV727_RS07160 Genome accession   NZ_CP024949
Coordinates   1450753..1451220 (+) Length   155 a.a.
NCBI ID   WP_194151514.1    Uniprot ID   -
Organism   Helicobacter pylori strain B136A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1445753..1456220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV727_RS07140 (CV727_07135) dnaK 1445842..1447704 (+) 1863 WP_145821226.1 molecular chaperone DnaK -
  CV727_RS07145 (CV727_07140) - 1447950..1448529 (-) 580 Protein_1352 hypothetical protein -
  CV727_RS07150 (CV727_07145) - 1448643..1449560 (+) 918 WP_194151513.1 O-acetylserine-dependent cystathionine beta-synthase -
  CV727_RS07155 (CV727_07150) - 1449581..1450723 (+) 1143 WP_145821232.1 cystathionine gamma-synthase -
  CV727_RS07160 (CV727_07155) luxS 1450753..1451220 (+) 468 WP_194151514.1 S-ribosylhomocysteine lyase Regulator
  CV727_RS07165 (CV727_07160) - 1451363..1453108 (+) 1746 WP_145821234.1 5'-nucleotidase C-terminal domain-containing protein -
  CV727_RS07170 (CV727_07165) tlpB 1453318..1455015 (+) 1698 WP_145821236.1 methyl-accepting chemotaxis protein TlpB -
  CV727_RS07175 (CV727_07170) - 1455046..1455828 (+) 783 WP_145821238.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17736.28 Da        Isoelectric Point: 7.1165

>NTDB_id=215404 CV727_RS07160 WP_194151514.1 1450753..1451220(+) (luxS) [Helicobacter pylori strain B136A]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=215404 CV727_RS07160 WP_194151514.1 1450753..1451220(+) (luxS) [Helicobacter pylori strain B136A]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGTTTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCCTACACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACAGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
AATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGTAATGAAAAACAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGTGCACAGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381