Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CV727_RS02695 Genome accession   NZ_CP024949
Coordinates   545549..546598 (-) Length   349 a.a.
NCBI ID   WP_145820228.1    Uniprot ID   -
Organism   Helicobacter pylori strain B136A     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 540549..551598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV727_RS02670 (CV727_02670) rpsL 541534..541941 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  CV727_RS02675 (CV727_02675) rpsG 541957..542424 (+) 468 WP_001254355.1 30S ribosomal protein S7 -
  CV727_RS02680 (CV727_02680) fusA 542436..544514 (+) 2079 WP_145820224.1 elongation factor G -
  CV727_RS02690 (CV727_02690) - 545096..545368 (+) 273 WP_000744165.1 hypothetical protein -
  CV727_RS02695 (CV727_02695) waaF 545549..546598 (-) 1050 WP_145820228.1 lipopolysaccharide heptosyltransferase II Regulator
  CV727_RS02700 (CV727_02700) hisS 546660..547988 (+) 1329 WP_145820230.1 histidine--tRNA ligase -
  CV727_RS02705 (CV727_02705) asd 547975..549015 (+) 1041 WP_145820232.1 aspartate-semialdehyde dehydrogenase -
  CV727_RS02710 (CV727_02710) - 549448..550615 (+) 1168 Protein_502 DUF874 family protein -
  CV727_RS02715 (CV727_02715) - 550852..551595 (-) 744 WP_145820234.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39484.26 Da        Isoelectric Point: 9.7891

>NTDB_id=215378 CV727_RS02695 WP_145820228.1 545549..546598(-) (waaF) [Helicobacter pylori strain B136A]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQSFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEKGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVATSTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=215378 CV727_RS02695 WP_145820228.1 545549..546598(-) (waaF) [Helicobacter pylori strain B136A]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATCTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTACTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.5

98.567

0.37