Detailed information NTG0215357

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: CV728_RS06460
• Genome accession: NZ_CP024948
• Coordinates: 1332026..1333225 (-)
• Length: 399 a.a.
• NCBI ID: WP_145817795.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B140
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1327026..1338225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV728_RS06435 (CV728_06445)	-	1327077..1327595 (-)	519	WP_000760568.1	hypothetical protein	-
CV728_RS06440 (CV728_06450)	-	1327592..1328536 (-)	945	WP_025444910.1	ATPase, T2SS/T4P/T4SS family	-
CV728_RS06445 (CV728_06455)	-	1328541..1328815 (-)	275	Protein_1239	hypothetical protein	-
CV728_RS06450 (CV728_06460)	-	1328833..1329804 (-)	972	WP_000363078.1	membrane protein	-
CV728_RS06455 (CV728_06465)	-	1329817..1332042 (-)	2226	WP_145817793.1	collagen-like protein	-
CV728_RS06460 (CV728_06470)	comB10	1332026..1333225 (-)	1200	WP_145817795.1	DNA type IV secretion system protein ComB10	Machinery gene
CV728_RS06465 (CV728_06475)	-	1333222..1334862 (-)	1641	WP_000196184.1	TrbG/VirB9 family P-type conjugative transfer protein	-
CV728_RS06470 (CV728_06480)	-	1334859..1336025 (-)	1167	WP_000067672.1	VirB8/TrbF family protein	-
CV728_RS08730 (CV728_06485)	-	1336018..1336152 (-)	135	WP_000723782.1	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44697.35 Da
• Isoelectric Point: 10.0424

>NTDB_id=215357 CV728_RS06460 WP_145817795.1 1332026..1333225(-) (comB10) [Helicobacter pylori strain B140]
MNKSLLKKIGLVIGGFGVLMALGLLANKDSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEESPKTTTTLQPTASTTA
NVSTNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPINSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMFTNARGTDVKGYNGLIGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINTVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEVNNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=215357 CV728_RS06460 WP_145817795.1 1332026..1333225(-) (comB10) [Helicobacter pylori strain B140]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGACTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCTACAACCTACAGCTTCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAAGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAGGAACAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGTGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAACGAGCATAAGCTCTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAACTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATATTTGCAAGTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTCATAGGCTATTACAATAATAACAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGTTCACTAATGCAAGAGGGACTGATGTGAAAGGCTATAATGG
CTTAATAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACACAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTATTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGAG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCAAAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.525	99.248	0.521