Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ2_RS05345 Genome accession   NZ_CP019406
Coordinates   1079524..1080129 (+) Length   201 a.a.
NCBI ID   WP_058106751.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Blegdam str. S-1824     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074524..1085129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ2_RS05325 (LFZ2_05260) - 1074919..1076679 (-) 1761 WP_000156448.1 AAA family ATPase -
  LFZ2_RS05330 (LFZ2_05265) matP 1076865..1077317 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ2_RS05335 (LFZ2_05270) ompA 1077389..1078441 (-) 1053 WP_001674965.1 porin OmpA -
  LFZ2_RS05340 (LFZ2_05275) sulA 1078798..1079307 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  LFZ2_RS05345 (LFZ2_05280) sxy/tfoX 1079524..1080129 (+) 606 WP_058106751.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ2_RS05350 (LFZ2_05285) yccS 1080116..1082269 (-) 2154 WP_000950876.1 YccS family putative transporter -
  LFZ2_RS05355 (LFZ2_05290) - 1082288..1082734 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ2_RS05360 (LFZ2_05295) helD 1082858..1084912 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23190.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215338 LFZ2_RS05345 WP_058106751.1 1079524..1080129(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Blegdam str. S-1824]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELSDWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215338 LFZ2_RS05345 WP_058106751.1 1079524..1080129(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Blegdam str. S-1824]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTTCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment