Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CV728_RS01460 Genome accession   NZ_CP024948
Coordinates   268652..269701 (-) Length   349 a.a.
NCBI ID   WP_145816622.1    Uniprot ID   -
Organism   Helicobacter pylori strain B140     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 263652..274701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV728_RS01435 (CV728_01435) rpsG 263884..264351 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  CV728_RS01440 (CV728_01440) fusA 264363..266441 (+) 2079 WP_145816618.1 elongation factor G -
  CV728_RS01445 (CV728_01445) - 266985..267974 (-) 990 WP_145816620.1 aldo/keto reductase -
  CV728_RS01455 (CV728_01455) - 268192..268518 (+) 327 WP_000744162.1 hypothetical protein -
  CV728_RS01460 (CV728_01460) waaF 268652..269701 (-) 1050 WP_145816622.1 lipopolysaccharide heptosyltransferase II Regulator
  CV728_RS01465 (CV728_01465) hisS 269763..271091 (+) 1329 WP_000632513.1 histidine--tRNA ligase -
  CV728_RS01470 (CV728_01470) asd 271078..272118 (+) 1041 WP_145816624.1 aspartate-semialdehyde dehydrogenase -
  CV728_RS01475 (CV728_01475) - 272556..273749 (+) 1194 WP_145816626.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39413.18 Da        Isoelectric Point: 9.7893

>NTDB_id=215335 CV728_RS01460 WP_145816622.1 268652..269701(-) (waaF) [Helicobacter pylori strain B140]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVTAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKLIKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHALLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=215335 CV728_RS01460 WP_145816622.1 268652..269701(-) (waaF) [Helicobacter pylori strain B140]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTATCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGGTAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTCGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTAGCCGCTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGCCCCACTGATGAGAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTGTTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAAAATGAAAAAAACCATTTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACGCTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364