Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CV729_RS06865 Genome accession   NZ_CP024947
Coordinates   1411831..1412880 (+) Length   349 a.a.
NCBI ID   WP_145733238.1    Uniprot ID   -
Organism   Helicobacter pylori strain J182     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1406831..1417880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV729_RS06845 (CV729_06850) - 1406985..1407728 (+) 744 WP_002203616.1 carbonic anhydrase -
  CV729_RS06850 (CV729_06855) - 1407965..1409002 (-) 1038 WP_145733559.1 DUF874 family protein -
  CV729_RS06855 (CV729_06860) asd 1409414..1410454 (-) 1041 WP_145733561.1 aspartate-semialdehyde dehydrogenase -
  CV729_RS06860 (CV729_06865) hisS 1410441..1411769 (-) 1329 WP_120864124.1 histidine--tRNA ligase -
  CV729_RS06865 (CV729_06870) waaF 1411831..1412880 (+) 1050 WP_145733238.1 lipopolysaccharide heptosyltransferase II Regulator
  CV729_RS08530 - 1413068..1413427 (-) 360 WP_338153705.1 hypothetical protein -
  CV729_RS06875 (CV729_06880) fusA 1413864..1415942 (-) 2079 WP_000101875.1 elongation factor G -
  CV729_RS06880 (CV729_06885) rpsG 1415954..1416421 (-) 468 WP_001254352.1 30S ribosomal protein S7 -
  CV729_RS06885 (CV729_06890) rpsL 1416437..1416844 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39410.15 Da        Isoelectric Point: 9.5732

>NTDB_id=215330 CV729_RS06865 WP_145733238.1 1411831..1412880(+) (waaF) [Helicobacter pylori strain J182]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWSASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHAAASTQTPLIALFGPTDEKETCPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=215330 CV729_RS06865 WP_145733238.1 1411831..1412880(+) (waaF) [Helicobacter pylori strain J182]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCACAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACCCACACCCCAAACACCCCTAAAAAAATCGGCTTTAATCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGTCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCCAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTTGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.719

97.994

0.37