Detailed information NTG0215296

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: CV729_RS00550
• Genome accession: NZ_CP024947
• Coordinates: 115349..116584 (-)
• Length: 411 a.a.
• NCBI ID: WP_000734986.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain J182
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 110349..121584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV729_RS00510 (CV729_00510)	-	110469..112196 (-)	1728	WP_194151354.1	type IV secretory system conjugative DNA transfer family protein	-
CV729_RS00515 (CV729_00515)	-	112197..112754 (-)	558	WP_145731500.1	hypothetical protein	-
CV729_RS00520 (CV729_00520)	-	112755..113045 (-)	291	WP_000159819.1	hypothetical protein	-
CV729_RS00525 (CV729_00525)	-	113042..113497 (-)	456	WP_145731502.1	mobilization protein	-
CV729_RS00530 (CV729_00530)	-	113547..114434 (-)	888	WP_145731504.1	ATPase, T2SS/T4P/T4SS family	-
CV729_RS00535 (CV729_00535)	-	114434..114733 (-)	300	WP_145731506.1	hypothetical protein	-
CV729_RS00540 (CV729_00540)	-	114730..114993 (-)	264	WP_145731508.1	hypothetical protein	-
CV729_RS00545 (CV729_00545)	-	114986..115279 (-)	294	WP_145731509.1	hypothetical protein	-
CV729_RS00550 (CV729_00550)	comB10	115349..116584 (-)	1236	WP_000734986.1	DNA type IV secretion system protein ComB10	Machinery gene
CV729_RS00555 (CV729_00555)	-	116581..118122 (-)	1542	WP_145731511.1	TrbG/VirB9 family P-type conjugative transfer protein	-
CV729_RS00560 (CV729_00560)	-	118122..119108 (-)	987	WP_145731513.1	VirB8/TrbF family protein	-
CV729_RS00565 (CV729_00565)	-	119242..121173 (-)	1932	Protein_111	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46442.47 Da
• Isoelectric Point: 10.0077

>NTDB_id=215296 CV729_RS00550 WP_000734986.1 115349..116584(-) (comB10) [Helicobacter pylori strain J182]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=215296 CV729_RS00550 WP_000734986.1 115349..116584(-) (comB10) [Helicobacter pylori strain J182]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCTCTAGTGCAAAAACTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TGGCGTCTCGTATTAGCAGTCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCCAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
TGTTAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGATATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAACATTATCGCTCAAATCATGCGAGATCAAATCAGAATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	55.172	70.56	0.389