Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ88_RS05470 Genome accession   NZ_CP019404
Coordinates   1120277..1120882 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Bardo strain SA20113257     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115277..1125882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ88_RS05450 (LFZ88_05450) - 1115672..1117432 (-) 1761 WP_000156459.1 Lon protease family protein -
  LFZ88_RS05455 (LFZ88_05455) matP 1117618..1118070 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ88_RS05460 (LFZ88_05460) ompA 1118142..1119194 (-) 1053 WP_001670727.1 porin OmpA -
  LFZ88_RS05465 (LFZ88_05465) sulA 1119551..1120060 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ88_RS05470 (LFZ88_05470) sxy/tfoX 1120277..1120882 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ88_RS05475 (LFZ88_05475) yccS 1120869..1123022 (-) 2154 WP_076937887.1 YccS family putative transporter -
  LFZ88_RS05480 (LFZ88_05480) - 1123041..1123487 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ88_RS05485 (LFZ88_05485) helD 1123611..1125665 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215292 LFZ88_RS05470 WP_001202375.1 1120277..1120882(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bardo strain SA20113257]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215292 LFZ88_RS05470 WP_001202375.1 1120277..1120882(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bardo strain SA20113257]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment