Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CV730_RS06700 Genome accession   NZ_CP024946
Coordinates   1391594..1392643 (+) Length   349 a.a.
NCBI ID   WP_145728871.1    Uniprot ID   -
Organism   Helicobacter pylori strain B147     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386594..1397643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV730_RS06680 (CV730_06690) - 1386626..1387369 (+) 744 WP_145728864.1 carbonic anhydrase -
  CV730_RS06685 (CV730_06695) - 1387605..1388744 (-) 1140 WP_145728865.1 DUF874 family protein -
  CV730_RS06690 (CV730_06700) asd 1389177..1390217 (-) 1041 WP_145728867.1 aspartate-semialdehyde dehydrogenase -
  CV730_RS06695 (CV730_06705) hisS 1390204..1391532 (-) 1329 WP_145728869.1 histidine--tRNA ligase -
  CV730_RS06700 (CV730_06710) waaF 1391594..1392643 (+) 1050 WP_145728871.1 lipopolysaccharide heptosyltransferase II Regulator
  CV730_RS06705 (CV730_06715) - 1392837..1393217 (-) 381 WP_000744161.1 hypothetical protein -
  CV730_RS06715 (CV730_06725) - 1393437..1394426 (+) 990 WP_001187414.1 aldo/keto reductase -
  CV730_RS06720 (CV730_06730) fusA 1394993..1397071 (-) 2079 WP_053577463.1 elongation factor G -
  CV730_RS06725 (CV730_06735) rpsG 1397083..1397550 (-) 468 WP_001254351.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39434.16 Da        Isoelectric Point: 9.6622

>NTDB_id=215290 CV730_RS06700 WP_145728871.1 1391594..1392643(+) (waaF) [Helicobacter pylori strain B147]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIESVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWLASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHAAASTQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=215290 CV730_RS06700 WP_145728871.1 1391594..1392643(+) (waaF) [Helicobacter pylori strain B147]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAATCCGTTTTTATAGACGACACTAAAAAATCCTTTTTCAGGCTGCTAGCCACTCATAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACCCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCTAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGCTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCATATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGCTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.304

97.994

0.375