Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ5_RS05265 Genome accession   NZ_CP019403
Coordinates   1099508..1100113 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Apapa str. SA20060561     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094508..1105113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ5_RS05245 (LFZ5_05245) - 1094903..1096663 (-) 1761 WP_039590797.1 Lon protease family protein -
  LFZ5_RS05250 (LFZ5_05250) matP 1096849..1097301 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ5_RS05255 (LFZ5_05255) ompA 1097373..1098425 (-) 1053 WP_001670727.1 porin OmpA -
  LFZ5_RS05260 (LFZ5_05260) sulA 1098782..1099291 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ5_RS05265 (LFZ5_05265) sxy/tfoX 1099508..1100113 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ5_RS05270 (LFZ5_05270) yccS 1100100..1102253 (-) 2154 WP_076932700.1 YccS family putative transporter -
  LFZ5_RS05275 (LFZ5_05275) - 1102272..1102718 (-) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ5_RS05280 (LFZ5_05280) helD 1102842..1104896 (+) 2055 WP_076932701.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=215271 LFZ5_RS05265 WP_001202375.1 1099508..1100113(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Apapa str. SA20060561]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=215271 LFZ5_RS05265 WP_001202375.1 1099508..1100113(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Apapa str. SA20060561]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment