Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AJGP001_RS07950 Genome accession   NZ_CP019401
Coordinates   1589153..1590850 (+) Length   565 a.a.
NCBI ID   WP_071154011.1    Uniprot ID   -
Organism   Planococcus faecalis strain AJ003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1584153..1595850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJGP001_RS07925 (AJGP001_07960) xseB 1584661..1584897 (+) 237 WP_058385500.1 exodeoxyribonuclease VII small subunit -
  AJGP001_RS07930 (AJGP001_07965) - 1584894..1585775 (+) 882 WP_071154010.1 polyprenyl synthetase family protein -
  AJGP001_RS07935 (AJGP001_07970) dxs 1585868..1587772 (+) 1905 WP_071154066.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AJGP001_RS07940 (AJGP001_07975) - 1587772..1588590 (+) 819 WP_188074734.1 TlyA family RNA methyltransferase -
  AJGP001_RS07945 (AJGP001_07980) argR 1588687..1589136 (+) 450 WP_058385497.1 transcriptional regulator ArgR -
  AJGP001_RS07950 (AJGP001_07985) recN 1589153..1590850 (+) 1698 WP_071154011.1 DNA repair protein RecN Machinery gene
  AJGP001_RS07955 (AJGP001_07990) spo0A 1590940..1591707 (+) 768 WP_071154012.1 sporulation transcription factor Spo0A -
  AJGP001_RS17495 - 1591885..1592061 (+) 177 WP_169835264.1 hypothetical protein -
  AJGP001_RS07960 (AJGP001_07995) - 1592318..1593052 (+) 735 WP_245830258.1 glycerophosphodiester phosphodiesterase family protein -
  AJGP001_RS07965 (AJGP001_08000) - 1593064..1593297 (-) 234 WP_058386914.1 DUF2627 domain-containing protein -
  AJGP001_RS07970 (AJGP001_08005) - 1593423..1595471 (+) 2049 WP_071154067.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63621.35 Da        Isoelectric Point: 5.0948

>NTDB_id=215247 AJGP001_RS07950 WP_071154011.1 1589153..1590850(+) (recN) [Planococcus faecalis strain AJ003]
MLRELDIRNFAIIDALTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLENEQHPVFRR
LEEFGITWSDGDILLRRELNDKGKNVCRINGKLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLDQFAGRSLAKSK
ESYSHTFDKYTKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVIGEEEEFIQERKKLQNFNKIYESISAAHEAIQG
ESKGLDWIGSAMSELEHAAAVDETFIGSSETLSGAFYLIQDTGTEIKRILDDMEFDPGRLNEIEQRLAAIQSLKRKYGTS
VEDILLYHEKQTDELDKLVNRDQRYQLDQEKLKELTEDLRVEAEELTILRKKAAKSLGKAIMEQLKELHMAKASFEVNFT
VLPSGRFDRHGHDAITFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVDSQVLCISHLPQVAAMADQHLFIEKKVDKQRTTTAVTELNGRERTEEMSRMLSGAEITDLTLQHAEELLSLAADR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=215247 AJGP001_RS07950 WP_071154011.1 1589153..1590850(+) (recN) [Planococcus faecalis strain AJ003]
ATGCTTCGGGAGTTAGATATACGCAATTTTGCTATTATTGATGCTTTGACAGTTAGCTTTTCTGAAGGATTGACTGTTTT
GACTGGAGAAACCGGAGCCGGTAAATCCATTATTATCGATGCGGTTCATCTTTTAGCAGGTGGACGAGGAAGCCAAGAAT
TTATTCGTCATGGCGCTAAAAAGGCAGAAATCGAAGGCTTGTTTTCATTAGAAAATGAACAACACCCGGTATTTCGCAGA
TTAGAGGAATTCGGTATCACTTGGAGTGATGGCGATATTTTGTTGCGCAGAGAATTAAATGATAAAGGCAAAAATGTCTG
TCGAATAAATGGTAAACTCGTTACCATTTCTATTTTACGTGAAGTTGGAGCTTCTCTAATTGATATTCACGGCCAACACG
AAACACAGGAATTGATGGATGAAAAACAGCATCTTTACTTGCTCGATCAGTTTGCCGGTAGAAGCTTAGCGAAGTCAAAA
GAAAGCTATAGCCACACATTTGATAAGTACACAAAATTAAAGCGAGAGTTTTCTTCTTATACTGAAAATGAGCAGCAAAT
TGCACAGCGTATTGATTTATTGACTTTCCAACTGCAAGAAATCGAAGCAGCGGAGTTGGTTATAGGAGAAGAAGAGGAAT
TTATTCAAGAACGTAAAAAATTACAAAATTTTAATAAGATATACGAGTCAATTTCTGCGGCGCACGAAGCAATTCAAGGA
GAAAGCAAAGGACTGGATTGGATTGGATCCGCTATGTCTGAACTTGAACATGCAGCAGCAGTAGATGAAACTTTTATAGG
GTCCTCTGAAACTTTATCCGGTGCTTTTTATTTAATCCAAGATACCGGTACGGAAATCAAGCGGATTTTAGATGATATGG
AATTCGATCCGGGTAGATTAAATGAAATCGAGCAACGTTTAGCTGCTATTCAATCGTTAAAAAGAAAATACGGGACTTCT
GTAGAAGACATTTTGCTGTATCATGAAAAGCAGACAGATGAATTGGATAAATTGGTTAACCGAGATCAGCGTTATCAATT
AGATCAAGAAAAGTTAAAAGAATTAACTGAGGATTTGCGTGTGGAAGCGGAAGAGTTAACGATTCTTCGCAAAAAAGCAG
CGAAAAGCCTAGGCAAAGCGATTATGGAGCAGTTAAAAGAATTACATATGGCAAAGGCATCGTTTGAAGTAAACTTTACC
GTGTTGCCAAGCGGTCGATTTGATCGTCATGGTCATGATGCAATTACTTTTTACATTTCAACAAATCTTGGCGAACCGTT
GAAACCTTTAACTAAAGTAGCATCGGGTGGGGAATTGTCCCGTATGATGTTGGCACTAAAAACCATCTTCTCTAAGCATC
AAGGCATAACTTCCATTATATTCGACGAAGTGGATACAGGTGTTAGCGGTCGAGTGGCTCAGGCTATTGCTGAGAAAATT
GCTGCTATCTCAGTCGATTCTCAAGTGCTTTGTATTTCCCATTTGCCTCAAGTAGCGGCGATGGCAGATCAGCATTTGTT
TATTGAGAAAAAAGTCGACAAGCAACGAACAACCACTGCGGTGACCGAGCTTAATGGAAGAGAGCGAACGGAAGAAATGA
GTCGTATGCTGTCAGGAGCTGAAATAACAGATCTGACTTTGCAACATGCGGAAGAATTGTTATCACTCGCGGCAGACCGT
AAACTATTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.281

100

0.527

Multiple sequence alignment