Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AJGP001_RS02280 Genome accession   NZ_CP019401
Coordinates   442868..443818 (+) Length   316 a.a.
NCBI ID   WP_078080097.1    Uniprot ID   -
Organism   Planococcus faecalis strain AJ003     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437868..448818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJGP001_RS02265 (AJGP001_02270) - 439090..439536 (+) 447 WP_071153497.1 hypothetical protein -
  AJGP001_RS02270 (AJGP001_02275) - 439810..441528 (-) 1719 WP_071153498.1 ABC transporter ATP-binding protein -
  AJGP001_RS02275 (AJGP001_02280) - 441722..442585 (+) 864 WP_078080096.1 DUF6612 family protein -
  AJGP001_RS02280 (AJGP001_02285) ceuB 442868..443818 (+) 951 WP_078080097.1 ABC transporter permease Machinery gene
  AJGP001_RS02285 (AJGP001_02290) - 443811..444761 (+) 951 WP_071153500.1 iron chelate uptake ABC transporter family permease subunit -
  AJGP001_RS02290 (AJGP001_02295) - 444758..445519 (+) 762 WP_071153501.1 ATP-binding cassette domain-containing protein -
  AJGP001_RS02295 (AJGP001_02300) - 445541..446497 (+) 957 WP_071153502.1 siderophore ABC transporter substrate-binding protein -
  AJGP001_RS02300 (AJGP001_02305) - 446718..447782 (+) 1065 WP_071153503.1 ABC transporter permease -
  AJGP001_RS02305 (AJGP001_02310) - 447786..448454 (+) 669 WP_058386447.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34830.07 Da        Isoelectric Point: 10.0983

>NTDB_id=215239 AJGP001_RS02280 WP_078080097.1 442868..443818(+) (ceuB) [Planococcus faecalis strain AJ003]
MKKRYLIPTLIILSIISLFVGVSSISVADLLDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLMFANASMLEKMAVAFAFALAGTFLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFVIAYLYANRFTVAGMGEDFSKNLGMKYRSVVNIGLVLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVMIYPYEISISLMVGVIGSFIFLFLLFRRKTYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=215239 AJGP001_RS02280 WP_078080097.1 442868..443818(+) (ceuB) [Planococcus faecalis strain AJ003]
GTGAAGAAGCGTTACTTAATACCAACATTAATCATACTGTCGATCATTTCCTTGTTTGTCGGAGTGAGCAGTATCAGTGT
AGCTGATTTGCTTGATTTCCAATCGGAAGAGACACAGATATTCTTGATCAGCCGACTGCCAAGGTTGGTCGCGATTTTGC
TGGCAGGTGCAGGGATGAGTATGGCAGGACTCATCATGCAGCAGTTAAGCCGCAATAAGTTCGTGTCTCCGACAACGGCA
GGTACATTAGACGCCACACGGCTTGGGATTCTGGTGTCGATGCTGATGTTCGCAAACGCATCGATGCTGGAAAAAATGGC
AGTGGCTTTCGCATTTGCGCTTGCCGGTACCTTCCTTTTCATGCAAATTCTAAACCGCATCAAATTTAAAGATGCCATAT
TCATTCCTTTGGTCGGTTTGATGTTCGGGAACATCCTGTCTTCCATCACAACGTTTTTCGCTTACCGGGCGGATGTTATC
CAGAATATGTCCGCTTGGCTGCAAGGTGACTTTTCGATGGTTATGAAGGGGAGTTATGAACTCCTCTACATCAGCGTTCC
GGTCTTTGTCATCGCCTATCTGTACGCCAACCGGTTTACGGTCGCGGGTATGGGTGAAGACTTCTCTAAAAATTTGGGAA
TGAAATACCGGAGCGTCGTCAACATCGGTTTGGTGCTCGTGGCCTTAATTACAGCGACGGTTGTCTTGACGGTAGGGGTT
ATCCCATTTCTTGGGTTGATCATTCCGAACATCGTATCGATCTTCAAAGGAGATCATCTACAAAAAACATTGCCGCATAC
AGCGATGCTTGGCGCTATTTTCTTGCTGGTGTGCGATATCTTGGGAAGAGTGATGATTTACCCGTATGAGATTTCCATCA
GCTTGATGGTCGGCGTTATCGGAAGCTTTATTTTCCTCTTCTTGTTGTTTAGGAGGAAAACGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535

Multiple sequence alignment