Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AJGP001_RS00495 Genome accession   NZ_CP019401
Coordinates   103719..105095 (+) Length   458 a.a.
NCBI ID   WP_058386757.1    Uniprot ID   -
Organism   Planococcus faecalis strain AJ003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98719..110095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJGP001_RS00475 (AJGP001_00475) - 99101..99571 (+) 471 WP_058386761.1 CtsR family transcriptional regulator -
  AJGP001_RS00480 (AJGP001_00480) - 99584..100117 (+) 534 WP_071153293.1 UvrB/UvrC motif-containing protein -
  AJGP001_RS00485 (AJGP001_00485) - 100107..101198 (+) 1092 WP_058386759.1 protein arginine kinase -
  AJGP001_RS00490 (AJGP001_00490) - 101195..103657 (+) 2463 WP_071153294.1 ATP-dependent Clp protease ATP-binding subunit -
  AJGP001_RS00495 (AJGP001_00495) radA 103719..105095 (+) 1377 WP_058386757.1 DNA repair protein RadA Machinery gene
  AJGP001_RS00500 (AJGP001_00500) - 105189..106268 (+) 1080 WP_058386756.1 PIN/TRAM domain-containing protein -
  AJGP001_RS00505 (AJGP001_00505) ispD 106298..106993 (+) 696 WP_058386755.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AJGP001_RS00510 (AJGP001_00510) ispF 106990..107490 (+) 501 WP_058386754.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AJGP001_RS00515 (AJGP001_00515) gltX 107531..108994 (+) 1464 WP_071153295.1 glutamate--tRNA ligase -
  AJGP001_RS00520 (AJGP001_00520) epsC 109307..109969 (+) 663 WP_058386752.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49875.34 Da        Isoelectric Point: 6.4242

>NTDB_id=215237 AJGP001_RS00495 WP_058386757.1 103719..105095(+) (radA) [Planococcus faecalis strain AJ003]
MAKKKTKFICQSCGYESARWMGKCPGCAAWNTMTEEVEVAAPKGTRGAFQHSAAVPQKAIPINAIETQDEPRVETELSEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGNRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIH
HTIEDVAPDFVIIDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGSAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDVNRVTLLMAVLEKRVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPEGIRVVGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=215237 AJGP001_RS00495 WP_058386757.1 103719..105095(+) (radA) [Planococcus faecalis strain AJ003]
ATGGCTAAGAAAAAGACGAAATTCATTTGTCAGTCGTGTGGCTATGAATCGGCTAGATGGATGGGGAAATGTCCGGGCTG
TGCAGCATGGAATACGATGACTGAAGAAGTAGAAGTGGCTGCTCCTAAAGGGACGCGTGGTGCTTTTCAACATAGTGCGG
CGGTTCCTCAAAAAGCGATACCGATTAATGCCATTGAAACGCAAGATGAACCACGAGTAGAAACAGAGCTCAGCGAATTA
AACCGTGTGCTGGGTGGTGGAATTGTACCTGGATCACTGGTACTTATTGGAGGAGATCCCGGTATCGGGAAATCAACGTT
GCTGTTGCAAGTTTCTGCGATGCTTGCAAATAGTGGAAACCGGGTATTATATATTTCCGGAGAAGAATCGATTAGACAAA
CTAAATTGCGTGCAGAGCGTTTAGATGCGTCATCTTCTGAGTTGTTTATCTACGCTGAAACAAATCTTGAATTGATTCAT
CACACGATTGAAGATGTAGCACCTGATTTTGTTATTATCGATTCAATTCAGACTGTTCACCACCCCGAAGTCACCTCTGC
ACCGGGTAGTGTGACGCAAGTAAGAGAAAGTACGGCAGAATTAATGCGAATCGCTAAAACAAAAAATATTGCCATTTTTC
TAGTGGGACACGTAACCAAAGAAGGGCAAATTGCAGGACCTCGGATTTTGGAACATATGGTAGATACGGTGTTGTATTTT
GAAGGCGAACGCCACCACACATACCGCATTTTACGCAGTGTGAAAAACCGTTTTGGTTCAACAAATGAAATCGCGATTTT
TGAAATGCTTCAAAGTGGATTAAAAGAAGTGTTGAATCCATCAGAACTATTTTTACAAGAGCGGTCGAGTGGTTCGGCAG
GCTCAACAGTCGTCGCTTCAATGGAAGGAACACGGCCGATTTTAGTTGAAATTCAAGCATTGGTGACTCCTTCAAGTTTT
AATTATCCGAAACGGATGGCAACGGGAATTGACGTCAATCGAGTGACCTTATTGATGGCAGTTCTAGAAAAGCGCGTTGG
TATGCTTTTGCAAGCGCAAGACGCGTACATTAAAGTTGCGGGTGGCGTAAAGCTTGACGAACCAGCGATTGATTTGGCTG
TATTAGCAAGTATTGTTTCAAGTTTCCGAGACAAAGCGCCAAACGTTTATGATTGTATTATTGGAGAGGTCGGATTGACT
GGTGAAGTTAGACGCGTATCGCGTATTGAGCAGCGCGTTCAAGAAGCAGCAAAACTAGGCTTTAAGCGTGCGATTATTCC
AGCATCTAATTTAGGTGGTTGGGATTATCCAGAAGGAATTCGCGTAGTCGGTGTAGAAAGTGTTAACGATGCATTAAAAG
AAATTTTTCCACAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.848

98.908

0.721
  radA Streptococcus pneumoniae Rx1

61.623

99.563

0.614
  radA Streptococcus pneumoniae D39

61.623

99.563

0.614
  radA Streptococcus pneumoniae R6

61.623

99.563

0.614
  radA Streptococcus pneumoniae TIGR4

61.623

99.563

0.614
  radA Streptococcus mitis NCTC 12261

61.623

99.563

0.614
  radA Streptococcus mitis SK321

61.623

99.563

0.614

Multiple sequence alignment