Detailed information NTG0215206

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PchlR47_RS08935
• Genome accession: NZ_CP019399
• Coordinates: 1995817..1998048 (+)
• Length: 743 a.a.
• NCBI ID: WP_063429108.1
• Uniprot ID: A0AAD1E519
• Organism: Pseudomonas chlororaphis strain R47
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1990817..2003048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PchlR47_RS08910 (PchlR47_08965)	-	1991938..1992597 (+)	660	WP_038580923.1	transglutaminase-like domain-containing protein	-
PchlR47_RS08915 (PchlR47_08970)	-	1992640..1993263 (+)	624	WP_053268525.1	glutathione S-transferase family protein	-
PchlR47_RS08920 (PchlR47_08975)	-	1993396..1994328 (+)	933	WP_009047814.1	ABC transporter ATP-binding protein	-
PchlR47_RS08925 (PchlR47_08980)	-	1994325..1995104 (+)	780	WP_063429107.1	ABC transporter permease	-
PchlR47_RS08930 (PchlR47_08985)	-	1995153..1995668 (-)	516	WP_009047815.1	DUF2062 domain-containing protein	-
PchlR47_RS08935 (PchlR47_08990)	comA	1995817..1998048 (+)	2232	WP_063429108.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PchlR47_RS08940 (PchlR47_08995)	exbB	1998151..1998786 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PchlR47_RS08945 (PchlR47_09000)	-	1998783..1999211 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
PchlR47_RS08950 (PchlR47_09005)	lpxK	1999211..2000221 (+)	1011	WP_063429110.1	tetraacyldisaccharide 4'-kinase	-
PchlR47_RS08955 (PchlR47_09010)	-	2000245..2000430 (+)	186	WP_007931663.1	Trm112 family protein	-
PchlR47_RS08960 (PchlR47_09015)	kdsB	2000427..2001191 (+)	765	WP_063429112.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PchlR47_RS08965 (PchlR47_09020)	-	2001191..2001655 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
PchlR47_RS08970 (PchlR47_09025)	murB	2001652..2002671 (+)	1020	WP_009047822.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81248.36 Da
• Isoelectric Point: 9.7323

>NTDB_id=215206 PchlR47_RS08935 WP_063429108.1 1995817..1998048(+) (comA) [Pseudomonas chlororaphis strain R47]
MRTGMLALAAGLLSLCFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLAHYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=215206 PchlR47_RS08935 WP_063429108.1 1995817..1998048(+) (comA) [Pseudomonas chlororaphis strain R47]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGTGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTTGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCTGCCGTAATGTATGCCCTG
GTGGCGGGACTGGCCCACTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCGTTCGCTTC
GGCCCTGGGGTACGGATTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGGGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTTTGGCAGCTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTGGTACTGC
CATCGTTGCGCAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGTCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAG
CGCGCATTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACTGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626