Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PspS34_RS20995 Genome accession   NZ_CP019398
Coordinates   4725859..4726494 (-) Length   211 a.a.
NCBI ID   WP_057713700.1    Uniprot ID   A0A2N8EN67
Organism   Pseudomonas sp. S34     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4720859..4731494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS34_RS20960 (PspS34_21335) - 4721261..4721731 (-) 471 WP_015096391.1 (2Fe-2S)-binding protein -
  PspS34_RS20965 (PspS34_21340) murB 4721973..4722992 (-) 1020 WP_154860326.1 UDP-N-acetylmuramate dehydrogenase -
  PspS34_RS20970 (PspS34_21345) - 4722989..4723453 (-) 465 WP_090457215.1 low molecular weight protein-tyrosine-phosphatase -
  PspS34_RS20975 (PspS34_21350) kdsB 4723453..4724217 (-) 765 WP_090457217.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspS34_RS20980 (PspS34_21355) - 4724214..4724399 (-) 186 WP_003179363.1 Trm112 family protein -
  PspS34_RS20985 (PspS34_21360) lpxK 4724424..4725434 (-) 1011 WP_154860327.1 tetraacyldisaccharide 4'-kinase -
  PspS34_RS20990 (PspS34_21365) - 4725434..4725862 (-) 429 WP_057713701.1 biopolymer transporter ExbD -
  PspS34_RS20995 (PspS34_21370) exbB 4725859..4726494 (-) 636 WP_057713700.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspS34_RS21000 (PspS34_21375) comA 4726593..4728827 (-) 2235 WP_154860328.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PspS34_RS21005 (PspS34_21380) - 4728963..4729478 (+) 516 WP_057713698.1 DUF2062 domain-containing protein -
  PspS34_RS21010 (PspS34_21385) - 4729634..4730413 (-) 780 WP_154860329.1 ABC transporter permease -
  PspS34_RS21015 (PspS34_21390) - 4730410..4731342 (-) 933 WP_057713696.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22914.04 Da        Isoelectric Point: 7.3615

>NTDB_id=215185 PspS34_RS20995 WP_057713700.1 4725859..4726494(-) (exbB) [Pseudomonas sp. S34]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAQRVIHELERYVNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=215185 PspS34_RS20995 WP_057713700.1 4725859..4726494(-) (exbB) [Pseudomonas sp. S34]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATCGCGGCCATGGCGATCGTTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTATGGGTCTGGATCAAGGACA
AACAGCTCAATAAGGAAAAGCTCAAGGAACTGCGCGCCAATTCGCCTTTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCTCAACGGGTCATCCATGAGCTCGAACGCTACGT
CAACGCCCTGGGCACCATTGCTGCCATGGCCCCGTTGCTGGGCTTGCTCGGTACCGTGCTGGGCATGATCGATATTTTCA
GCGCGTTCACAGGCTCAGGCATGACCACCAACGCTTCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCT
GCCGGTTTGATGGTTGGTATCCCGGCGGTATTCTTCCATCGATTCCTGCAACGCCGGATCGATGAACTGGTGGTAGGGAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTAGTGCAGGGCGACCGCGATGTGGACCTGGCCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8EN67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment