Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM344_RS20240 Genome accession   NZ_CP024886
Coordinates   3900943..3901419 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3895943..3906419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM344_RS28185 - 3897639..3897750 (-) 112 Protein_3744 integrase -
  AM344_RS20210 (AM344_20200) - 3898116..3898970 (-) 855 WP_001588930.1 DUF4942 domain-containing protein -
  AM344_RS20215 (AM344_20205) - 3899055..3899252 (-) 198 WP_000839291.1 DUF957 domain-containing protein -
  AM344_RS20220 (AM344_20210) - 3899264..3899752 (-) 489 WP_000761667.1 DUF5983 family protein -
  AM344_RS20225 (AM344_20215) - 3899749..3900126 (-) 378 WP_000854747.1 TA system toxin CbtA family protein -
  AM344_RS20230 (AM344_20220) - 3900216..3900584 (-) 369 WP_021538665.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM344_RS20235 (AM344_20225) - 3900659..3900880 (-) 222 WP_001825901.1 DUF987 domain-containing protein -
  AM344_RS20240 (AM344_20230) radC 3900943..3901419 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  AM344_RS20245 (AM344_20235) - 3901435..3901920 (-) 486 WP_021538211.1 antirestriction protein -
  AM344_RS20250 (AM344_20240) - 3902012..3902830 (-) 819 WP_001234693.1 DUF932 domain-containing protein -
  AM344_RS20260 (AM344_20250) - 3902931..3903164 (-) 234 WP_021538212.1 DUF905 family protein -
  AM344_RS20265 (AM344_20255) - 3903170..3903847 (-) 678 WP_001097364.1 hypothetical protein -
  AM344_RS20270 (AM344_20260) - 3903966..3904850 (-) 885 WP_000010387.1 GTPase -
  AM344_RS20275 (AM344_20265) - 3904957..3905889 (+) 933 WP_021538213.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=215162 AM344_RS20240 WP_001186747.1 3900943..3901419(-) (radC) [Escherichia coli strain AR_0017]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=215162 AM344_RS20240 WP_001186747.1 3900943..3901419(-) (radC) [Escherichia coli strain AR_0017]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392