Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BW707_RS13750 Genome accession   NZ_CP019392
Coordinates   2925174..2925803 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain XH992     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2920174..2930803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW707_RS13730 (BW707_15010) matP 2921073..2921525 (+) 453 WP_000877166.1 macrodomain Ter protein MatP -
  BW707_RS13735 (BW707_15015) - 2921646..2922991 (+) 1346 Protein_2701 IS4-like element IS4 family transposase -
  BW707_RS13740 (BW707_15020) ompA 2923038..2924090 (-) 1053 WP_024175778.1 porin OmpA -
  BW707_RS13745 (BW707_15030) sulA 2924446..2924955 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BW707_RS13750 (BW707_15035) sxy/tfoX 2925174..2925803 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BW707_RS13755 (BW707_15040) yccS 2925766..2927928 (-) 2163 WP_000875033.1 YccS family putative transporter -
  BW707_RS13760 (BW707_15045) yccF 2927938..2928384 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BW707_RS13765 (BW707_15050) helD 2928507..2930561 (+) 2055 WP_012311774.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=215121 BW707_RS13750 WP_000839153.1 2925174..2925803(+) (sxy/tfoX) [Escherichia coli strain XH992]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=215121 BW707_RS13750 WP_000839153.1 2925174..2925803(+) (sxy/tfoX) [Escherichia coli strain XH992]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment