Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AM344_RS08000 Genome accession   NZ_CP024886
Coordinates   1450996..1452423 (+) Length   475 a.a.
NCBI ID   WP_021524295.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0017     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1445996..1457423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM344_RS07970 (AM344_07950) pduU 1446374..1446724 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  AM344_RS07975 (AM344_07955) - 1446729..1447172 (+) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  AM344_RS07980 (AM344_07960) tmaR 1447272..1447601 (-) 330 WP_000450409.1 DUF496 family protein -
  AM344_RS07985 (AM344_07965) yeeA 1447773..1448831 (-) 1059 WP_001200890.1 FUSC family protein -
  AM344_RS07990 (AM344_07970) sbmC 1449029..1449502 (-) 474 WP_021524294.1 DNA gyrase inhibitor SbmC -
  AM344_RS07995 (AM344_07975) dacD 1449621..1450787 (-) 1167 WP_100272967.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AM344_RS08000 (AM344_07980) sbcB 1450996..1452423 (+) 1428 WP_021524295.1 exodeoxyribonuclease I Machinery gene
  AM344_RS08005 (AM344_07985) plaP 1452497..1453855 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AM344_RS08010 (AM344_07990) yoeI 1453845..1453907 (-) 63 WP_010723108.1 membrane protein YoeI -
  AM344_RS08015 (AM344_07995) yeeY 1454122..1455051 (-) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  AM344_RS08020 (AM344_08000) yeeZ 1455097..1455921 (-) 825 WP_021524296.1 SDR family oxidoreductase -
  AM344_RS08025 (AM344_08005) yoeB 1456004..1456258 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  AM344_RS08030 (AM344_08010) yefM 1456255..1456506 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  AM344_RS08040 (AM344_08015) hisL 1456789..1456839 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=215103 AM344_RS08000 WP_021524295.1 1450996..1452423(+) (sbcB) [Escherichia coli strain AR_0017]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLQALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=215103 AM344_RS08000 WP_021524295.1 1450996..1452423(+) (sbcB) [Escherichia coli strain AR_0017]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACAGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583