Detailed information NTG0215015

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VCA1552_RS01525
• Genome accession: NZ_CP024867
• Coordinates: 292613..293620 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain A1552
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 287613..298620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCA1552_RS01490 (VCA1552_00292)	ftsB	287670..287954 (+)	285	WP_001263189.1	cell division protein FtsB	-
VCA1552_RS01495 (VCA1552_00293)	ispD	287951..288649 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VCA1552_RS01500 (VCA1552_00294)	ispF	288646..289122 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VCA1552_RS01505 (VCA1552_00295)	truD	289152..290237 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
VCA1552_RS01510 (VCA1552_00296)	surE	290239..290991 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
VCA1552_RS01515 (VCA1552_00297)	-	290984..291610 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VCA1552_RS01520 (VCA1552_00298)	nlpD	291610..292539 (+)	930	WP_053036405.1	murein hydrolase activator NlpD	-
VCA1552_RS01525 (VCA1552_00299)	rpoS	292613..293620 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
VCA1552_RS01530 (VCA1552_00300)	mutS	293713..296301 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
VCA1552_RS01535 (VCA1552_00301)	cysM	296569..297456 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=215015 VCA1552_RS01525 WP_000116737.1 292613..293620(+) (rpoS) [Vibrio cholerae strain A1552]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=215015 VCA1552_RS01525 WP_000116737.1 292613..293620(+) (rpoS) [Vibrio cholerae strain A1552]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1