Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VCA1552_RS01400 Genome accession   NZ_CP024867
Coordinates   267762..268235 (-) Length   157 a.a.
NCBI ID   WP_001068472.1    Uniprot ID   B7X6V2
Organism   Vibrio cholerae strain A1552     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262762..273235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1552_RS01360 - 263228..263452 (-) 225 WP_306461095.1 high-affinity zinc uptake system protein ZnuA precursor -
  VCA1552_RS01365 (VCA1552_00268) - 263650..264930 (+) 1281 WP_001883323.1 peptidoglycan DD-metalloendopeptidase family protein -
  VCA1552_RS01370 (VCA1552_00269) - 265108..265335 (-) 228 WP_000749780.1 hypothetical protein -
  VCA1552_RS01375 (VCA1552_00270) - 265383..265751 (-) 369 WP_000176666.1 hypothetical protein -
  VCA1552_RS01380 (VCA1552_00271) - 265782..266516 (-) 735 WP_000066832.1 WYL domain-containing protein -
  VCA1552_RS01390 (VCA1552_00272) - 266835..267278 (-) 444 WP_000041085.1 DUF2787 domain-containing protein -
  VCA1552_RS01395 (VCA1552_00273) - 267328..267765 (-) 438 WP_000572499.1 DUF2787 domain-containing protein -
  VCA1552_RS01400 (VCA1552_00274) radC 267762..268235 (-) 474 WP_001068472.1 DNA repair protein RadC Machinery gene
  VCA1552_RS01405 (VCA1552_00275) - 268547..270358 (+) 1812 WP_000110139.1 DUF262 domain-containing protein -
  VCA1552_RS01410 (VCA1552_00276) - 270358..272823 (+) 2466 WP_000434811.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17746.01 Da        Isoelectric Point: 5.9272

>NTDB_id=215014 VCA1552_RS01400 WP_001068472.1 267762..268235(-) (radC) [Vibrio cholerae strain A1552]
MNPKTSDYQKQQRYQENEILEHAAEILATRYVRGDALINPDATKEYVRCKLGSHEREVFALLLLDNQNRLIEFKELFHGT
VDAASVYPREVVKAVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=215014 VCA1552_RS01400 WP_001068472.1 267762..268235(-) (radC) [Vibrio cholerae strain A1552]
ATGAATCCCAAAACTTCCGATTACCAAAAGCAGCAACGCTATCAGGAAAATGAAATCCTAGAGCATGCGGCGGAGATACT
GGCTACGCGCTACGTGCGTGGTGATGCTCTAATCAACCCTGATGCCACCAAAGAGTATGTGCGCTGTAAGCTAGGCAGCC
ATGAGCGTGAAGTGTTTGCCTTATTGTTACTGGATAACCAAAACCGCCTGATTGAGTTTAAAGAGCTGTTTCATGGAACG
GTGGACGCGGCCAGCGTCTACCCGAGAGAAGTGGTGAAAGCAGTGTTAGAAGTGAATGCCGCAGCGGTGATATTTGCCCA
TAACCATCCATCCGGTGACTCAACACCGTCTCAAGCCGATAGACGCATAACTGAAAGACTCAAGGACGCTTTAGCGCTGG
TGGATGTCCGCGTTCTCGACCATATCGTCACAGGTGATACTTGTACCTCATTTGCTGAAAGGGGGTGGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7X6V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.445

87.261

0.414