Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BWZ24_RS16100 Genome accession   NZ_CP019355
Coordinates   2912349..2912978 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain XH988     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2907349..2917978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWZ24_RS16085 (BWZ24_17435) helD 2907591..2909645 (-) 2055 WP_001297106.1 DNA helicase IV -
  BWZ24_RS16090 (BWZ24_17440) yccF 2909768..2910214 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BWZ24_RS16095 (BWZ24_17445) yccS 2910224..2912386 (+) 2163 WP_000875046.1 YccS family putative transporter -
  BWZ24_RS16100 (BWZ24_17450) sxy/tfoX 2912349..2912978 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BWZ24_RS16105 (BWZ24_17455) sulA 2913197..2913706 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BWZ24_RS16110 (BWZ24_17465) ompA 2914063..2915115 (+) 1053 WP_001361736.1 porin OmpA -
  BWZ24_RS16115 (BWZ24_17470) matP 2915190..2915642 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  BWZ24_RS16120 (BWZ24_17475) ycbZ 2915828..2917588 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=214997 BWZ24_RS16100 WP_000839153.1 2912349..2912978(-) (sxy/tfoX) [Escherichia coli strain XH988]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=214997 BWZ24_RS16100 WP_000839153.1 2912349..2912978(-) (sxy/tfoX) [Escherichia coli strain XH988]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment