Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM342_RS14860 Genome accession   NZ_CP024862
Coordinates   2929795..2930271 (-) Length   158 a.a.
NCBI ID   WP_021553055.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2924795..2935271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM342_RS14820 (AM342_14830) cadC 2924878..2926416 (-) 1539 WP_100190781.1 lysine decarboxylation/transport transcriptional activator CadC -
  AM342_RS14830 (AM342_14840) - 2927165..2928007 (-) 843 WP_022645115.1 DUF4942 domain-containing protein -
  AM342_RS14835 (AM342_14845) - 2928092..2928286 (-) 195 WP_024181941.1 DUF957 domain-containing protein -
  AM342_RS28330 - 2928365..2928514 (-) 150 Protein_2716 DUF5983 family protein -
  AM342_RS14845 (AM342_14850) - 2928511..2928888 (-) 378 WP_029701676.1 TA system toxin CbtA family protein -
  AM342_RS14850 (AM342_14855) - 2928978..2929346 (-) 369 WP_021553056.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM342_RS14855 (AM342_14860) - 2929509..2929730 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM342_RS14860 (AM342_14865) radC 2929795..2930271 (-) 477 WP_021553055.1 RadC family protein Machinery gene
  AM342_RS14865 (AM342_14870) - 2930287..2930766 (-) 480 WP_001564060.1 antirestriction protein -
  AM342_RS14870 (AM342_14875) - 2931032..2931850 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  AM342_RS14875 (AM342_14880) - 2931940..2932173 (-) 234 WP_001278293.1 DUF905 family protein -
  AM342_RS14880 (AM342_14885) - 2932179..2932856 (-) 678 WP_001097302.1 hypothetical protein -
  AM342_RS14885 (AM342_14890) - 2933004..2933684 (-) 681 WP_029702103.1 WYL domain-containing protein -
  AM342_RS14890 (AM342_14895) - 2933887..2934771 (-) 885 WP_001116795.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=214979 AM342_RS14860 WP_021553055.1 2929795..2930271(-) (radC) [Escherichia coli strain AR_0015]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214979 AM342_RS14860 WP_021553055.1 2929795..2930271(-) (radC) [Escherichia coli strain AR_0015]
ATGCAACAGATTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399