Detailed information NTG0214974

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: BWR22_RS01775
• Genome accession: NZ_CP019352
• Coordinates: 403283..404641 (+)
• Length: 452 a.a.
• NCBI ID: WP_076731729.1
• Uniprot ID: A0AAC9LIL1
• Organism: Lacinutrix venerupis strain DOK2-8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 398283..409641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWR22_RS01750 (BWR22_01750)	-	398952..399758 (-)	807	WP_076731725.1	glycogen/starch synthase	-
BWR22_RS01755 (BWR22_01755)	panC	399932..400780 (+)	849	WP_198033386.1	pantoate--beta-alanine ligase	-
BWR22_RS01760 (BWR22_01760)	panD	400794..401144 (+)	351	WP_013869457.1	aspartate 1-decarboxylase	-
BWR22_RS01765 (BWR22_01765)	-	401148..402101 (+)	954	WP_076731727.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
BWR22_RS01770 (BWR22_01770)	-	402138..403283 (+)	1146	WP_076731728.1	alpha/beta hydrolase	-
BWR22_RS01775 (BWR22_01775)	radA	403283..404641 (+)	1359	WP_076731729.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 50020.39 Da
• Isoelectric Point: 6.0992

>NTDB_id=214974 BWR22_RS01775 WP_076731729.1 403283..404641(+) (radA) [Lacinutrix venerupis strain DOK2-8]
MAKVKTTFFCQSCGTQYSKWQGQCTACKEWNTIVEEVVQKPEKNDWKTPTNTQKRVSKPLTIKQIDSSKEARLDTLDAEF
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERINPDNESCYILTETKTQNIFKQI
EALEPDIVIIDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETNTPVVLIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVFRILRAQKNRFGSTHELGIYEMQGSGLREVSNPSEILISKKDEELSGNAIAATLEGMRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVASILSSNEDEALQSNYCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFSTIFVSKYNKISLQNTTIKIQLISKIEDLVDFIV

Nucleotide

• Length: 1359 bp

>NTDB_id=214974 BWR22_RS01775 WP_076731729.1 403283..404641(+) (radA) [Lacinutrix venerupis strain DOK2-8]
ATGGCAAAAGTTAAAACTACTTTTTTTTGTCAAAGTTGTGGTACGCAATATTCTAAATGGCAAGGGCAGTGTACAGCTTG
TAAAGAGTGGAATACAATTGTAGAAGAGGTTGTACAAAAACCAGAAAAAAACGATTGGAAAACACCTACAAATACTCAAA
AACGTGTTTCGAAGCCGTTAACAATAAAACAAATAGATTCGTCTAAAGAAGCGAGATTAGATACTTTAGATGCAGAATTT
AATCGCGTTTTAGGAGGCGGAATTGTACCAGGTTCCTTAACGCTTTTAGGTGGCGAACCAGGTATAGGTAAAAGTACATT
ACTGCTTCAAATATCTCTTAAATTACCATATAAAACACTTTATGTCTCTGGAGAAGAAAGCCAGAAACAAATAAAAATGC
GTGCAGAACGTATTAATCCAGATAACGAAAGTTGTTACATTTTAACAGAAACAAAAACACAGAATATATTTAAGCAAATT
GAAGCTTTAGAACCAGATATTGTTATCATAGATTCCATTCAAACGCTGCATAGCGATTATATAGAGTCGTCAAGCGGAAG
TATTTCTCAAATAAAAGAATGCACTACGGAGCTTATTAAATTTGCTAAAGAAACTAATACACCTGTTGTTTTAATTGGCC
ATATTACAAAAGATGGCAACATTGCTGGACCAAAAATTTTAGAACACATGGTAGATACTGTGTTACAATTTGAAGGCGAT
CGTAATCATGTATTTAGAATTTTAAGAGCACAAAAAAACCGTTTTGGTTCCACGCATGAACTTGGTATTTACGAAATGCA
AGGATCAGGTTTACGAGAAGTAAGTAACCCAAGCGAAATTTTAATTTCTAAAAAAGACGAAGAACTTTCTGGTAACGCAA
TTGCGGCAACTTTAGAAGGTATGCGACCATTAATGATAGAGGTTCAGGCCTTGGTAAGTACTGCTGTATATGGGACTCCG
CAACGTAGTGCAACAGGTTTTAATGCAAAAAGATTAAATATGTTACTGGCTGTTTTAGAAAAAAGAGCAGGTTTTCGTTT
AGGTGCAAAAGATGTTTTCTTAAATATAACAGGAGGCATTACTGTAGATGATCCGGCAATAGATTTAGCAGTAGTAGCTT
CTATTCTTTCTTCAAACGAAGATGAAGCCTTGCAGTCAAATTATTGCTTTGCTGCCGAAGTTGGTTTATCTGGTGAGATT
AGACCGGTACAACGTGTAGAGCAACGTATTCTTGAGGCAGAAAAACTTGGTTTTTCTACTATTTTTGTTTCAAAATATAA
TAAAATATCTCTTCAAAACACTACAATAAAAATTCAGTTGATTTCTAAAATTGAAGATTTGGTAGATTTTATTGTCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (69-219)

• Subunit ChlI of Mg-chelatase (ChlI) (327-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.93	95.133	0.485
radA	Streptococcus mitis SK321	49.21	98.009	0.482
radA	Streptococcus pneumoniae Rx1	50.117	94.469	0.473
radA	Streptococcus pneumoniae D39	50.117	94.469	0.473
radA	Streptococcus pneumoniae R6	50.117	94.469	0.473
radA	Streptococcus pneumoniae TIGR4	50.117	94.469	0.473
radA	Streptococcus mitis NCTC 12261	50.117	94.469	0.473