Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM342_RS08120 Genome accession   NZ_CP024862
Coordinates   1606242..1606718 (+) Length   158 a.a.
NCBI ID   WP_001384029.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1601242..1611718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM342_RS08090 (AM342_08090) - 1601911..1602795 (+) 885 WP_000010408.1 GTPase -
  AM342_RS08095 (AM342_08095) - 1602998..1603678 (+) 681 WP_001282919.1 WYL domain-containing protein -
  AM342_RS08100 (AM342_08100) - 1603826..1604503 (+) 678 WP_001097301.1 hypothetical protein -
  AM342_RS08105 (AM342_08105) - 1604533..1604742 (+) 210 WP_032150870.1 DUF905 family protein -
  AM342_RS08110 (AM342_08110) - 1604832..1605650 (+) 819 WP_001175175.1 DUF932 domain-containing protein -
  AM342_RS08115 (AM342_08115) - 1605742..1606227 (+) 486 WP_000213722.1 antirestriction protein -
  AM342_RS08120 (AM342_08120) radC 1606242..1606718 (+) 477 WP_001384029.1 RadC family protein Machinery gene
  AM342_RS08125 (AM342_08125) - 1606805..1607026 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  AM342_RS08130 (AM342_08130) - 1607106..1607474 (+) 369 WP_001285607.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM342_RS08135 (AM342_08135) - 1607564..1607941 (+) 378 WP_001094444.1 TA system toxin CbtA family protein -
  AM342_RS08140 (AM342_08140) - 1607938..1608087 (+) 150 Protein_1517 DUF5983 family protein -
  AM342_RS08145 (AM342_08145) - 1608163..1608360 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  AM342_RS08150 (AM342_08150) - 1608445..1609288 (+) 844 Protein_1519 DUF4942 domain-containing protein -
  AM342_RS08155 (AM342_08155) - 1609631..1609801 (+) 171 Protein_1520 IS110 family transposase -
  AM342_RS08160 (AM342_08160) - 1610612..1611595 (+) 984 WP_001298261.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=214942 AM342_RS08120 WP_001384029.1 1606242..1606718(+) (radC) [Escherichia coli strain AR_0015]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214942 AM342_RS08120 WP_001384029.1 1606242..1606718(+) (radC) [Escherichia coli strain AR_0015]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392