Detailed information NTG0214938

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM342_RS06890
• Genome accession: NZ_CP024862
• Coordinates: 1355430..1356422 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0015
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1350430..1361422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM342_RS06865 (AM342_06870)	ygbN	1351085..1352449 (+)	1365	WP_000104455.1	GntP family transporter	-
AM342_RS06870 (AM342_06875)	-	1352488..1352724 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AM342_RS06875 (AM342_06880)	-	1352735..1354162 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AM342_RS06880 (AM342_06885)	-	1354162..1354755 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AM342_RS06885 (AM342_06890)	-	1354902..1355309 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
AM342_RS06890 (AM342_06895)	rpoS	1355430..1356422 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM342_RS06895 (AM342_06900)	nlpD	1356485..1357579 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM342_RS06900 (AM342_06905)	pcm	1357764..1358390 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM342_RS06905 (AM342_06910)	surE	1358384..1359145 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM342_RS06910 (AM342_06915)	truD	1359126..1360175 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AM342_RS06915 (AM342_06920)	ispF	1360172..1360651 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM342_RS06920 (AM342_06925)	ispD	1360651..1361361 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=214938 AM342_RS06890 WP_000081550.1 1355430..1356422(-) (rpoS) [Escherichia coli strain AR_0015]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=214938 AM342_RS06890 WP_000081550.1 1355430..1356422(-) (rpoS) [Escherichia coli strain AR_0015]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715