Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AM342_RS06585 Genome accession   NZ_CP024862
Coordinates   1299147..1299662 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain AR_0015     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1294147..1304662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM342_RS06560 (AM342_06560) ygaZ 1294546..1295283 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AM342_RS06565 (AM342_06565) ygaH 1295273..1295608 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  AM342_RS06570 (AM342_06570) emrR 1295699..1296229 (+) 531 WP_100190775.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AM342_RS06575 (AM342_06575) emrA 1296356..1297528 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AM342_RS06580 (AM342_06580) emrB 1297545..1299083 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AM342_RS06585 (AM342_06585) luxS 1299147..1299662 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AM342_RS06590 (AM342_06590) gshA 1299812..1301368 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  AM342_RS06595 (AM342_06595) yqaA 1301441..1301869 (-) 429 WP_001287454.1 YqaA family protein -
  AM342_RS06600 (AM342_06600) yqaB 1301866..1302432 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AM342_RS06630 (AM342_06630) csrA 1303724..1303909 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=214935 AM342_RS06585 WP_001130211.1 1299147..1299662(-) (luxS) [Escherichia coli strain AR_0015]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=214935 AM342_RS06585 WP_001130211.1 1299147..1299662(-) (luxS) [Escherichia coli strain AR_0015]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731