Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AM342_RS03010 Genome accession   NZ_CP024862
Coordinates   554180..555607 (+) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0015     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 549180..560607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM342_RS02975 (AM342_02980) yeeW 549364..549558 (+) 195 WP_000988600.1 DUF5983 family protein -
  AM342_RS28235 - 549604..549684 (+) 81 Protein_546 hypothetical protein -
  AM342_RS02980 (AM342_02985) - 549973..550119 (-) 147 Protein_547 transposase domain-containing protein -
  AM342_RS02985 (AM342_02990) - 550173..550355 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM342_RS02990 (AM342_02995) tmaR 550456..550785 (-) 330 WP_000450409.1 DUF496 family protein -
  AM342_RS02995 (AM342_03000) yeeA 550957..552015 (-) 1059 WP_001200890.1 FUSC family protein -
  AM342_RS03000 (AM342_03005) sbmC 552213..552686 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  AM342_RS03005 (AM342_03010) dacD 552805..553971 (-) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AM342_RS03010 (AM342_03015) sbcB 554180..555607 (+) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  AM342_RS03015 (AM342_03020) tsuB 555650..555877 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AM342_RS03020 (AM342_03025) tsuA 555891..556949 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  AM342_RS03025 (AM342_03030) plaP 557128..558486 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AM342_RS03030 yoeI 558476..558538 (-) 63 WP_010723108.1 membrane protein YoeI -
  AM342_RS03035 (AM342_03035) yeeY 558753..559682 (-) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  AM342_RS03040 (AM342_03040) yeeZ 559728..560552 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=214925 AM342_RS03010 WP_021523141.1 554180..555607(+) (sbcB) [Escherichia coli strain AR_0015]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=214925 AM342_RS03010 WP_021523141.1 554180..555607(+) (sbcB) [Escherichia coli strain AR_0015]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment