Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM341_RS22925 Genome accession   NZ_CP024859
Coordinates   4497579..4498055 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4492579..4503055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM341_RS22880 (AM341_22860) sbmC 4493065..4493538 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  AM341_RS22885 (AM341_22865) yeeA 4493736..4494794 (+) 1059 WP_001200905.1 FUSC family protein -
  AM341_RS22890 (AM341_22870) tmaR 4494966..4495295 (+) 330 WP_000450409.1 DUF496 family protein -
  AM341_RS27210 (AM341_22875) - 4495396..4495578 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM341_RS26965 - 4495698..4495778 (+) 81 WP_023441679.1 hypothetical protein -
  AM341_RS26415 - 4496067..4496147 (-) 81 Protein_4209 hypothetical protein -
  AM341_RS22905 (AM341_22885) yeeW 4496193..4496387 (-) 195 WP_000988600.1 DUF5983 family protein -
  AM341_RS22910 (AM341_22890) cbtA 4496384..4496758 (-) 375 WP_000854818.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AM341_RS22915 (AM341_22895) cbeA 4496847..4497215 (-) 369 WP_001313071.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM341_RS22920 (AM341_22900) yeeT 4497295..4497516 (-) 222 WP_000692301.1 DUF987 domain-containing protein -
  AM341_RS22925 (AM341_22905) radC 4497579..4498055 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  AM341_RS22930 (AM341_22910) - 4498071..4498550 (-) 480 WP_000860076.1 antirestriction protein -
  AM341_RS22935 (AM341_22915) - 4498632..4499453 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  AM341_RS22945 (AM341_22925) - 4499674..4500006 (-) 333 Protein_4217 hypothetical protein -
  AM341_RS26970 - 4500852..4501040 (+) 189 Protein_4219 IS4 family transposase -
  AM341_RS26975 (AM341_22935) - 4501019..4501192 (+) 174 Protein_4220 cobalamin biosynthesis protein -
  AM341_RS22965 (AM341_22940) cobU 4501344..4501889 (+) 546 WP_000973176.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  AM341_RS22970 (AM341_22945) cobS 4501886..4502629 (+) 744 WP_001326708.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=214911 AM341_RS22925 WP_001186726.1 4497579..4498055(-) (radC) [Escherichia coli strain AR_0014]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214911 AM341_RS22925 WP_001186726.1 4497579..4498055(-) (radC) [Escherichia coli strain AR_0014]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment