Detailed information NTG0214897

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM341_RS19270
• Genome accession: NZ_CP024859
• Coordinates: 3742047..3743039 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0014
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3737047..3748039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM341_RS19240 (AM341_19225)	ispD	3737108..3737818 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AM341_RS19245 (AM341_19230)	ispF	3737818..3738297 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM341_RS19250 (AM341_19235)	truD	3738294..3739343 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AM341_RS19255 (AM341_19240)	surE	3739324..3740085 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM341_RS19260 (AM341_19245)	pcm	3740079..3740705 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM341_RS19265 (AM341_19250)	nlpD	3740890..3741984 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM341_RS19270 (AM341_19255)	rpoS	3742047..3743039 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM341_RS19275 (AM341_19260)	ygbN	3743133..3744497 (-)	1365	WP_000104441.1	GntP family transporter	-
AM341_RS19280 (AM341_19265)	ygbM	3744586..3745362 (-)	777	WP_100183776.1	HPr family phosphocarrier protein	-
AM341_RS19285 (AM341_19270)	ygbL	3745367..3746005 (-)	639	WP_001278994.1	aldolase	-
AM341_RS19290 (AM341_19275)	otnK	3746002..3747264 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=214897 AM341_RS19270 WP_000081550.1 3742047..3743039(+) (rpoS) [Escherichia coli strain AR_0014]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=214897 AM341_RS19270 WP_000081550.1 3742047..3743039(+) (rpoS) [Escherichia coli strain AR_0014]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715