Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM341_RS17595 Genome accession   NZ_CP024859
Coordinates   3419192..3419668 (-) Length   158 a.a.
NCBI ID   WP_001186193.1    Uniprot ID   A0A0H2Z4W9
Organism   Escherichia coli strain AR_0014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3414192..3424668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM341_RS17555 (AM341_17535) gspL 3414823..3416001 (+) 1179 WP_000094991.1 type II secretion system protein GspL -
  AM341_RS17560 (AM341_17540) yghD 3416003..3416539 (+) 537 WP_000942785.1 GspM family type II secretion system protein YghD -
  AM341_RS17565 (AM341_17545) - 3416906..3417466 (-) 561 Protein_3215 DUF4942 domain-containing protein -
  AM341_RS17570 (AM341_17550) - 3417551..3417748 (-) 198 WP_085949158.1 DUF957 domain-containing protein -
  AM341_RS17575 (AM341_17555) - 3417776..3417973 (-) 198 Protein_3217 DUF5983 family protein -
  AM341_RS17580 (AM341_17560) cbtA 3417970..3418347 (-) 378 WP_000854820.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AM341_RS17585 (AM341_17565) - 3418436..3418804 (-) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM341_RS17590 (AM341_17570) - 3418884..3419105 (-) 222 WP_000692347.1 DUF987 domain-containing protein -
  AM341_RS17595 (AM341_17575) radC 3419192..3419668 (-) 477 WP_001186193.1 RadC family protein Machinery gene
  AM341_RS17600 (AM341_17580) - 3419683..3420162 (-) 480 WP_000706978.1 antirestriction protein -
  AM341_RS17605 (AM341_17585) - 3420428..3421246 (-) 819 WP_001175155.1 DUF932 domain-containing protein -
  AM341_RS17610 (AM341_17590) - 3421336..3421569 (-) 234 WP_000883181.1 DUF905 family protein -
  AM341_RS17615 (AM341_17595) - 3421575..3422252 (-) 678 WP_001097565.1 hypothetical protein -
  AM341_RS17620 (AM341_17600) - 3422403..3423083 (-) 681 WP_001278649.1 WYL domain-containing protein -
  AM341_RS17625 (AM341_17605) - 3423286..3424170 (-) 885 WP_001116795.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=214892 AM341_RS17595 WP_001186193.1 3419192..3419668(-) (radC) [Escherichia coli strain AR_0014]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214892 AM341_RS17595 WP_001186193.1 3419192..3419668(-) (radC) [Escherichia coli strain AR_0014]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z4W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment