Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM341_RS13815 Genome accession   NZ_CP024859
Coordinates   2696891..2697559 (+) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2691891..2702559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM341_RS13780 (AM341_13755) yicC 2691911..2692774 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  AM341_RS13790 (AM341_13765) rph 2692901..2693617 (+) 717 WP_001247093.1 ribonuclease PH -
  AM341_RS13795 (AM341_13770) pyrE 2693682..2694323 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AM341_RS13800 (AM341_13775) slmA 2694360..2694956 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AM341_RS13805 (AM341_13780) dut 2695063..2695521 (-) 459 WP_000976070.1 dUTP diphosphatase -
  AM341_RS13810 (AM341_13785) coaBC 2695499..2696719 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM341_RS13815 (AM341_13790) radC 2696891..2697559 (+) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  AM341_RS13820 (AM341_13795) rpmB 2697776..2698012 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  AM341_RS13825 (AM341_13800) rpmG 2698033..2698200 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  AM341_RS13830 (AM341_13805) mutM 2698298..2699107 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AM341_RS13835 (AM341_13810) coaD 2699146..2699625 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AM341_RS13840 (AM341_13815) waaA 2699633..2700910 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AM341_RS13845 (AM341_13820) rfaQ 2701317..2702387 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=214877 AM341_RS13815 WP_001336353.1 2696891..2697559(+) (radC) [Escherichia coli strain AR_0014]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=214877 AM341_RS13815 WP_001336353.1 2696891..2697559(+) (radC) [Escherichia coli strain AR_0014]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496